R90391

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90391

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • increased speed (PATO:0000303)
    (Adult plant::Growth::fast)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90391

Determination of introduced cDNA(s)

  • J033043K22 - Rice Full-length cDNAs - Original: J033043K22

    full reading [+] show sequence

    Nucleotide sequence: J033043K22 - full reading 
    GGTGAGAGAG AAACGTACGC GATGCGACGA GCTCCTACTC CGATCTCCCC 
    GATGCGATCT CGCCAAACCC TAATCCCACC CACCACCGCG CCGGAGTCCT 
    AGCGCCGCCC GCAGCCGCCG CCGCCGTCCG GATGCTGCGG CCGTGACCTC 
    CTCCTCCTCC GCCTCTGACA TCCCAGCCAT GGGAGCCGCC GACAAGTGGC 
    TCCTCCCGCT CGTGTCGGTC TCCTTCGTCT CGCTGCTGCT CTTCCTCTCC 
    GCGCTCTCGG GCTTCTCCGC CTCCTCCTCG CTCTTCGCGC GCCTCCCGCC 
    GCCCTCCTAC GTCCGCCGCG GGGCAGCCGC GCCGCCGTCC TTCGCGTACG 
    TGCTGTCGGG GGGGAGAGGG GAGGGGAGGA AGCTGCTGCG GCTGCTGCTC 
    GCGGTCTACC ATCCCAGGAA CCGCTACCTG CTCCACCTCT CGGCCGATGC 
    GCCCGAGTCC GAGCGCGTCG AGCTGGCCGC CGCCGTGTCG CGCGCCGCGC 
    CCGCCGTGCG CGCCTTCGGG AATGTCGATG TCGTTGGCCG CCCCACCGCT 
    GGCACACCGA TGGGATCCTC GGGACTCGCG GCTACGCTCC GCGCCGCGGC 
    CGCGCTGCTG CGCCTGGATT CCGAGTGGGA CTGGTTCGTC ACGCTCAACG 
    CCGCCGACTA CCCCCTTGTC ACCCAGGACG ACTTGATTCA TGTCTTCTCC 
    TCAGTGCCAA GGCATCTCAA CTTCATCGAT CACACTAGTG ATATTGGATG 
    GAAAGAGACT CAGAGAGTGC AACCAATCAT AGTAGATGCT GGAATATACT 
    TGGCAGGAAG AAATCAGTTC TTCCAAGCCA CAGAGAAACG TGATACTCCT 
    GATGGTTTCA AATTCTTCAC AGGTTCTCCG TGGGTCATTC TAAATCGACG 
    GTTTATAGAG TATTGCATAT TTGGTTGGGA GAATCTCCCT CGAACTCTTC 
    TCATGTACTT CACAAACGTA ATGCTACCTC AGGAAGGGTA TTTCCACTCA 
    GTTGTATGCA ACTCAGACTT CCGTAACTCC ACAGTTAACA GCGACATGCG 
    GTATATGGAA TGGGATGATC CACCCCAGAT GGAACCCCAT TTTCTGAACA 
    CGACACATTA TGATGAGATA GTGGAGAGCG GAGTGCCTTT TGCTAGAAAG 
    TTTCGGGAGA ATGAACCGCT GCTGGACAAG ATTGATGAAA GAGTACTCCA 
    CCGTTGGCGT CACAGACCTG TTCCTGGTGC CTGGTGCACA GGCAGAAAAA 
    GGTGGTTCAA TGATCCATGC TCCCAATGGA GCAATGTCAA CATTGTAAGA 
    CCTGGTCCCC AGGCTGAGAA GTTCCGCAAA CATATGAATC AGATCATAGA 
    GGAATCTGCA TCAGGCAACA ACTCATGCAA GCAATAGCAG CAATGAAGCG 
    CGAGATTTTA CTTCCCATGT TTGAAGCGAT GAGCTTTTCT CATTTTGCAT 
    AGAGGGGCTC TTCACGAACT TCAGC

    Gene models with high sequence identity

    1. AT1G71070.1 [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
      E-value: 2e-109; Score: 393.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Core-2/I-Branching enzyme 7.2e-50
    HMMPanther GLYCOSYLATION ENZYME-LIKE PROTEIN 2e-160
    HMMPanther Glycosyl transferase, family 14 2e-160

    See the detailed result >

    AT1G71070.1

    Model type
    Protein coding
    Short Description
    Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
    Computational Description
    Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G39990.1); Has 951 Blast hits to 950 proteins in 117 species: Archae - 0; Bacteria - 44; Metazoa - 555; Fungi - 0; Plants - 318; Viruses - 14; Other Eukaryotes - 20 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR