R90409

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90409

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90409

Determination of introduced cDNA(s)

  • J023093N24 - Rice Full-length cDNAs - Original: J023093N24

    full reading [+] show sequence

    Nucleotide sequence: J023093N24 - full reading
    GGACGACCCA ACCAATCGAC TCGCACCACC ACCAGCAGCT CAAGCAGCAA 
    CAGCTCAAAC GGAGGAAGAT CTCATCGCCA TGACGACCGG CAATGGCGAC
    GCACCGGTGA TCAAGAACGC CCACAGCGAC ATCGACAGCA CCAACAAGAC
    GCTGCTCAAG AGCGACGCCC TGTACAAGTA TGTCCTGGAC ACGACGGTGC
    TGCCACGGGA GCCGGAGTGC ATGCGCGATC TGCGCCTCAT CACGGACAAG
    CACCAGTGGG GGTTCATGCA GTCGTCGGCG GATGAGGCGC AGCTGCTGGG
    GATGCTGCTG AAGATGGCCG GAGCGAAGAG GACAATCGAG GTGGGTGTCT
    TCACCGGCTA CTCGCTGCTG GCGACGGCGC TGGCGCTGCC GGAGGACGGG
    AAGGTGGTGG CGATCGACCC GGACAGGGAG AGCTACGAGA TCGGGCGGCC
    GTTCTTGGAG AAGGCCGGGG TGGCGCACAA GGTGGACTTC CGCGAGGGGA
    AGGGGCTGGA GAAGCTGGAC GAGCTGCTCG CCGAGGAGGC GGCGGCGGGG
    CGCGAGGCGG CGTTCGACTT CGCGTTCGTG GACGCGGACA AGCCCAACTA
    CGTCAAGTAC CACGAGCAGC TGCTGCAGCT GGTGCGCGTC GGCGGGCACA
    TCGTGTACGA CAACACGCTG TGGGCCGGCA CGGTGGCGCT GCCGCCGGAC
    ACGCCGCTGT CGGACCTGGA CCGGAGGTTC TCCGTCGCCA TCAGGGACCT
    CAACTCCAGG CTCGCCGCCG ACCCGCGCAT CGACGTCTGC CAGCTCGCCA
    TCGCCGACGG CATCACCATC TGCCGCCGCC TCGTGTGAGG TCGAGACCGA
    GACCTTACCG GCCGATCCAT CCATCGCTCT CGCGTGATTA ATTAACGTGT
    GTTGCTGTAC TCTTCTACTG CTACAACTAT ACTATTACTT CCTTAATTGC
    CGCTTAAATT TTCCTATACG TGTTTCAATC AATGAGATTA TTATATTCTT
    CGAGCATGAG AGAGACGGAG TTGTAGGGAC ATTTGATGAT GGTTGTTACT
    GTACTACATG TTGATAAGTG CAACATCTCT TTCCATGGTT GCTACTCT

    Gene models with high sequence identity

    1. AT4G34050.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 5e-64; Score: 241.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther O-methyltransferase, family 3 1.6e-70
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.7e-38
    Gene3D no description 1.1e-50
    HMMPfam O-methyltransferase, family 3 7.6e-78

    See the detailed result >

    AT4G34050.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    caffeoyl coenzyme A O-methyltransferase 1 (CCoAOMT1); FUNCTIONS IN: caffeoyl-CoA O-methyltransferase activity; INVOLVED IN: coumarin biosynthetic process, response to cadmium ion; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26220.1); Has 5458 Blast hits to 5455 proteins in 1478 species: Archae - 33; Bacteria - 3172; Metazoa - 243; Fungi - 122; Plants - 614; Viruses - 0; Other Eukaryotes - 1274 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR