R90438

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90438

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1 rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90438

Determination of introduced cDNA(s)

  • J013001C24 - Rice Full-length cDNAs - Original: J013001C24

    full reading [+] show sequence

    Nucleotide sequence: J013001C24 - full reading
    GTAGCAGCAG CGGCCGGCCA TCATCAGTGA TCCTCTACAA TCATCGACTT 
    TCAGCAAATT AAGATGGCTG CTGCCTTCTC CTCCACCGTT GGAGCTCCGG
    CGTCCACTCC GACCAACTTC CTGGGGAAGA AGCTGAAGAA GCAGGTGACA
    TCGGCGGTGA ACTACCATGG CAAGAGCTCC AACATCAACA GGTTCAAGGT
    GATGGCCAAG GAGCTGGACG AGGGCAAGCA GACCGACCAG GACAGGTGGA
    AGGGTCTCGC CTACGACATC TCCGATGACC AGCAGGACAT CACCAGGGGG
    AAGGGTTTCG TCGACTCCCT TTTCCAGGCT CCCACGGGTG ATGGCACCCA
    CGAGGCCGTC CTCAGCTCCT ACGAGTACCT CAGCCAGGGT CTCAGAACGT
    ACGACTTCGA CAACACCATG GGAGGCTTCT ACATCGCCCC TGCTTTCATG
    GACAAGCTCG TCGTCCACAT CTCCAAGAAC TTCATGACCC TCCCCAACAT
    CAAGGTCCCA CTCATCCTGG GTATCTGGGG AGGCAAGGGT CAGGGAAAAT
    CCTTCCAGTG TGAGCTCGTC TTCGCCAAGA TGGGGATCAA CCCCATCATG
    ATGAGCGCCG GAGAGCTGGA GAGCGGCAAC GCCGGAGAGC CGGCGAAGCT
    GATCAGGCAG CGGTACCGTG AGGCGGCAGA CATCATCAAG AAGGGGAAGA
    TGTGCTGCCT CTTCATCAAC GATCTGGACG CGGGTGCAGG TCGCATGGGA
    GGCACCACCC AGTACACGGT GAACAACCAG ATGGTGAACG CCACCCTGAT
    GAACATCGCC GACAACCCAA CCAACGTGCA GCTCCCCGGG ATGTACAACA
    AGGAGGACAA CCCCCGTGTC CCCATCATCG TCACCGGCAA CGACTTCTCC
    ACGCTGTACG CGCCGCTCAT CCGTGACGGG CGTATGGAGA AGTTCTACTG
    GGCTCCCACC CGCGACGACC GTGTCGGCGT CTGCAAGGGT ATCTTCCGCA
    CCGACAACGT CCCCGACGAG GACATCGTCA AGATCGTCGA CAGCTTCCCA
    GGCCAATCCA TCGATTTCTT CGGCGCTCTT CGTGCCCGTG TTTACGACGA
    CGAGGTGCGC AAGTGGGTGT CGGACACGGG TGTGGAGAAC ATTGGCAAGA
    GGCTGGTGAA CTCGAGGGAG GGCCCACCGG AGTTCGAGCA GCCCAAGATG
    ACGATCGAAA AGCTCATGGA GTACGGATAC ATGCTTGTGA AGGAGCAGGA
    GAACGTCAAG CGTGTGCAGC TGGCTGAGCA GTACTTGAGC GAGGCTGCTC
    TTGGTGACGC TAACTCCGAC GCCATGAAGA CTGGTTCCTT CTACGGTTCT
    GCGCCATCCA GCTGAATAAA AGATCTCTAG CTATTCGCAT CCCATCGATG
    CATCGTAGGC GGCCTGCATA GGAGGAGGAG GGCAAGGAGC ACAGCAAGCA
    GGTAACCTGC CTGTGCCGGA AGGTTGCACC GACCCTGTTG CCAAGAACTT
    CGACCCAACG GCGAGGAGCG ACGACGGCAG CTGCCTTTAC ACCTTTTAAG
    CAGGCCGGCT TGACGCTTGC TATTAATTAT TTCTCCTTTT TATGTTTTCT
    CTTTGTTCTG TGTATCAGAT CGCGCCCAAG CCATAGCTGG GCATGACAAG
    TTTTTGTTAA TAATAATATA ATATAAAGGT

    Gene models with high sequence identity

    1. AT2G39730.1 [+] show detail - rubisco activase
      E-value: 0; Score: 66.20

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 0.000000000011
    HMMPfam ATPase, AAA-type, core 0.0000000000000043
    superfamily P-loop containing nucleoside triphosphate hyd 1.7e-21

    See the detailed result >

    AT2G39730.1

    Model type
    Protein coding
    Short Description
    rubisco activase
    Curator Summary
    Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.
    Computational Description
    rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 11 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2406 Blast hits to 2358 proteins in 526 species: Archae - 328; Bacteria - 489; Metazoa - 254; Fungi - 429; Plants - 406; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR