R90439

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90439

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90439

Determination of introduced cDNA(s)

  • J023031L04 - Rice Full-length cDNAs - Original: J023031L04

    full reading [+] show sequence

    Nucleotide sequence: J023031L04 - full reading 
    GCTCGAGCCA GCCATAGCCT CCTCTCCTCT CCACGCGACG AGCAAGTGGA 
    GGAGCGGCGG CGGCGGCCGG CGATCGAGCT GCTCGATCGG CCATGGATGC 
    TCCAGTTATT ACACTCCTCG TCTTCCTCGT CGCCGTCGCT GCGGCAACTG 
    CGGCGGCGGA GATGCCGCGG ATGGAGCACC CGCGCAAGGG CGACGGGTCG 
    CTGAGCCTCC TCGCCGTCGG CGACTGGGGG CGCCGCGGCG CGTACAACCA 
    GTCGATGGTC GCCGCGCAGA TGGGAATAGT AGGGGAGAAG ATGGACATCG 
    ACTTCGTCAT CTCCACCGGC GACAACTTCT ACAAGAACGG CCTCACCGGC 
    GTCGATGATA AGGCCTTCGA AGAATCCTTC TCCGACATCT ACACCGCCAA 
    GAGCCTCCAC AAGCCATGGT ACACCGTTCT TGGCAACCAT GACTACAGGG 
    GCGACGCCCT CGCCCAGCTG AGCCCTGTTC TTCGCAAGGT CGACAGCCGC 
    TGGATCTGCA TCAAGTCCTT CGTCGTTAGC GCAGAGATCG CGGATTTCTT 
    CTTCGTGGAC ACGACGCCGT TCGTGCTCAA GTACTGGACT GATCCCAAGA 
    ACAGCAAGTA CGACTGGAGA GGGGTTTCTC CCCGTGAAAC CTACATTGCA 
    AATGTCCTCA AGGATCTGGA GGATGCACTG GAGCAGTCCA AAGCGCCGTG 
    GAAGATCGTG GTCGGACACC ACGCCATCAG GAGCGTCAGC CAGCACGGCG 
    ATACCAAGGA GCTCCTGGAG CATCTCCTTC CAATCCTCAA AGCACATGGA 
    GTTGATCTCT ACCTCAACGG CCACGACCAC TGCCTCGAGC ACATCAGCAG 
    CAGGGACAGC AAGATTCAGT ACCTGACGAG CGGGCCGGGT CGAAGGCGTG 
    GCGCGGGGTG CAGACGGCGA ACACGGACAA GGTGGAGTTC TTCTACGACG 
    GGCAGGGATT CATGTCGCTG CGGCTGACGG CGGCGGAGGC TAGCCTCGCC 
    TTCTACGACG TCGCCGGCAA GATCCTCCAC ACATGGATGG TCGCCAAACC 
    AGCCACCGGG TACTGAGATA GTGAGATTGC GAGCAGCTAG CTAGCTCTGT 
    GATGTACTTG ATGGTGTAAT GGCAAGCGGT GTGTGGTTTC AACCTAAACC 
    CCCGAGGTGT TCGACGGTGA AACTTGGGTT TTGGTGCTAT TGCTATGTCA 
    ACGGGGATGA GTTTTCTCAT GATTGATTGA AATCTTATTC GTCTAATTCC 
    TCCTTCGGGA CTTGTTCGGT TTGAATGGAA TTGAAGAAAA TTGAGAGGGA 
    ATAATTTCAC ATC

    Gene models with high sequence identity

    1. AT3G17790.1 [+] show detail - purple acid phosphatase 17
      E-value: 2e-107; Score: 68.60

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 0.00044
    Gene3D no description 8.4e-81
    HMMPfam Metallophosphoesterase 4.6e-18
    superfamily Metallo-dependent phosphatases 1.5e-47
    HMMPanther PURPLE ACID PHOSPHATASE-RELATED 9.8e-167
    HMMPanther TARTRATE-RESISTANT ACID PHOSPHATASE 9.8e-167
    HMMPanther PURPLE ACID PHOSPHATASE-RELATED 1.8e-16
    HMMPanther TARTRATE-RESISTANT ACID PHOSPHATASE 1.8e-16

    See the detailed result >

    AT3G17790.1

    Model type
    Protein coding
    Short Description
    purple acid phosphatase 17
    Computational Description
    purple acid phosphatase 17 (PAP17); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 3 (TAIR:AT1G14700.1); Has 1229 Blast hits to 1218 proteins in 312 species: Archae - 4; Bacteria - 345; Metazoa - 336; Fungi - 8; Plants - 191; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR