R90445

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90445

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90445

Determination of introduced cDNA(s)

  • J013127I02 - Rice Full-length cDNAs - Original: J013127I02

    full reading [+] show sequence

    Nucleotide sequence: J013127I02 - full reading 
    GACGTGCAAC CGCTCGCGAA AAGCCAGTGC GACACAGCGG CGGCGGCGAG 
    ATCGTCTGCG TCTTCTTCGC CGTCGTCGTG GTCTCCGTTC TGCTTCGTTT 
    TTTTACCGGT CTCCATGGAC AACAACGCCG AGGCAGCGAA TGACGGCGCC 
    GGCGCCGGCG AGCGGCGGCG GCTGCCGGAC TTCCAGCAGT CGGTGCGGCT 
    CAAGTACGTG AAGCTGGGGT ACCACTACCT CATCACCAAC GGCGTGTACC 
    TCCTCCTGAC GCCGCTCATC GCCCTCGTCG CCGTCCACCT CTCCACGCTC 
    ACCGCCGGCG ACGTCGCCGG CCTCTGGTCG CACCTCCGCT TCAACCTCGT 
    CTCCGTCGTC GCCTGCACCA CCCTCCTCGT CTTCCTCTCC ACCGTCCGCT 
    TCCTCACCCG CCCGCGCCCC GTCTACCTCG TCGACTTCGC CTGCTACAAG 
    CCGCCGCCGG AGCGCCGGTG CAGCCGGGAC GCCTTCATGC GGTGCTCCAG 
    GCTCGCCGGA TGCTTCACCG CCGCCAGCCT CGACTTCCAG CGCAGGATCG 
    TCGAGCGCTC GGGCCTCGGC GACGACACCT ACCTCCCCGC CGCCGTGCTC 
    CGGGAGCCGC CCAACCCGAG CATGGCGGAG GCGCGGCGCG AGGCCGAGGC 
    CGTCATGTTC GGCGCCGTCG ACGACCTCCT CGCCAAGACC GGCGTGAGCG 
    CCAAGGAGAT CGGCGTCCTC GTCGTCAACT GCAGCCTCTT CAACCCGACG 
    CCGTCGCTGT CCGCCATGGT GGTGAACCAC TACAAGCTCC GCGGCAACAT 
    CGTCAGCTAC AACCTCGGCG GCATGGGCTG CAGCGCCGGC CTCCTCGCCA 
    TCGATCTCGC CAAGGACCTC CTCCAGGTGC ACCGAAACTC GTACGCGCTC 
    GTCATCAGCA TGGAGAACAT CACGCTCAAC TGGTACTCCG GCAACGACCG 
    GTCGATGCTG GTGTCCAACT GCCTCTTCCG GATGGGCGGC GCGGCGATCC 
    TGCTGTCGAA CAGGTGGTCG GAGAGGCGCC GGTCCAAGTA CGAGCTGGTG 
    CACACGGTGC GGACGCACAA GGGCGGCGAC GACAAGTGCT TCGGTTGCGT 
    CACCCAGGAG GAGGACGGCG AGGGCAATGT CGGCGTCGCG CTGTCCAAGG 
    ACCTCATGGC GGTCGCCGGC GACGCGCTGA AGACGAACAT CACGACGCTG 
    GGTCCCCTCG TCCTGCCGCT GTCGGAGCAG CTCCTGTTCA TGGCGACGCT 
    GGTCGCCAAG AAGCTGCTCA AGATGAAGAA CGTCAAGCCC TACATCCCCG 
    ACTTCAAGCT GGCGTTCGAG CACTTCTGCG TGCACGCCGG CGGCAGGGCG 
    GTGCTGGACG AGATCGAGAA GAACTTGTCG CTGGGGGAGT GGCAGATGGA 
    GCCGTCACGG ATGACGCTGT ACAGGTTTGG GAACACGTCG AGCAGCTCGC 
    TGTGGTACGA GCTGGCGTAC AGCGAGGCGA AGGGGAGGGT GAGGAGGAGG 
    GACAGGGTGT GGCAGATCGC GTTCGGGTCC GGGTTCAAGT GCAACAGCGC 
    GGTGTGGAGG GCGCTCCGGT CGGTGGACCC GGAGGAGGAG GCGCTGAAGA 
    AGAACCCGTG GATGGATGAG ATCGATCGGT TCCCCGTGGT TGTTCCCAGG 
    GTGTCCAGGA TTTCAACCGA CTGAGCTTGA ATAGATTAAT TTGGTGCTCC 
    TTTGGAATTG GCACTTTTGT TAGGTGGATG CACCAAGGTG ATTACGGATT 
    GTTGGGTTTT GTGGTACTTG CAAATTGTTT TTGATCTTTT AATCTATTGT 
    TAGGGTAGGA ACAGGAGTGT GTTGTTGTGT CTGTCTTGTG GTTGTACGTT 
    CACCACTTCA GCTTGGGTGT GTGATCAGTC CTCCAAATTT TCTGATTATG 
    GACCAAATTT GGCGAATTTT GATTGGACG

    Gene models with high sequence identity

    1. AT2G26640.1 [+] show detail - 3-ketoacyl-CoA synthase 11
      E-value: 0; Score: 753.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPIR Very-long-chain 3-ketoacyl-CoA synthase 0
    HMMPfam FAE1/Type III polyketide synthase-like protein 2.5e-144
    HMMPfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal 0.0000000032
    superfamily Thiolase-like 1.1e-96
    Gene3D Thiolase-like, subgroup 1.6e-55
    Gene3D Thiolase-like, subgroup 5.5e-24

    See the detailed result >

    AT2G26640.1

    Model type
    Protein coding
    Short Description
    3-ketoacyl-CoA synthase 11
    Curator Summary
    Encodes KCS11, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
    Computational Description
    3-ketoacyl-CoA synthase 11 (KCS11); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: response to cold, response to light stimulus, response to osmotic stress; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 2 (TAIR:AT1G04220.1); Has 3664 Blast hits to 3650 proteins in 908 species: Archae - 0; Bacteria - 1588; Metazoa - 0; Fungi - 2; Plants - 1914; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR