R90455

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90455

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90455

Determination of introduced cDNA(s)

  • J023134P18 - Rice Full-length cDNAs - Original: J023134P18

    full reading [+] show sequence

    Nucleotide sequence: J023134P18 - full reading 
    TCTTCCTCCC CTCAATCCCC CCTTTTCTCA CGGCGTCGCG GCCCCCCCGA 
    AATAAAGCCG TCGTCGACAC CTCCCCCGAG CCGCAAGCAA CCCCGCGATT 
    CCCCCGCATC GCCGGCGAAT CGGCGGCGGC GACGACGAGG ACGACGAGGA 
    GGCCATAGGG TTGTGGAGGA GGGGTGGGGG ACCTGTCTTC GATGCGCGGC 
    GCATGGCGGC GGTGAACAGC CTCTACGTCG CCGCGGCATC CACCGCGGCC 
    AGCGCCGCGG CGCTGCAGTG GTGGGCGGGG TCCCTCCTCG ACGGGGATGC 
    CGACGCGGCG GGCGGGGGAG GAGGAGGAGG AGGAGGGGAC TGGCTCGGCA 
    CGGTGCTGGG CTCGCACGTG ACCGTCGCGC TCCTGGCGAA TCTGGCGGCG 
    CACGTGTTCC TCGTCCTCAT CCTCTCCCTC AAGACACTAT TTTTTGTTCA 
    ATTAACCTCT TCTGAGACTA GAAAGGTGTT GGAACACATC ATTAACTATG 
    TGCTTTACAA GGGAACTTTT CTCCCACTGG TTGTGCCTCC TAATTCTCAA 
    CAAATAATCC TTTGGTCAAG TTGGTTGGGC CTTCTTTGTT CCCTGAAGAT 
    GTTTCAATCA TTGGCTAGAG AACGCCTTGA ACAGCTCAAT GCTTCACCAT 
    CAGCGACTCC ATCAAAATAC TTTCGTGTAT ATTCTGCACT ATTGCTGGTT 
    CTATCGGCTG ATGTACTATG GATAAAGCTT TGTGTTGGGT TCTGCAAGTC 
    GTGTAATTCT CAACTATTTT GGCTTATGTT TTTTGAGCCA CTTAGTATTG 
    GCTTTGAGAC ACTGCAGTCA ATCATGGTGC ATGGATTTCA GTTGTTTGAC 
    ATATGGCAAC GACATCAAAT GGACAGTGGT GTGGACTATC TTGATTTCCA 
    AAAAACTTAT AAGCAAGCAG CAGGATCTTT TTCTGAGTGG AGAGGCAGAC 
    TAGTCAGAAA TTTTGGTTTT GTCATTGACT TGATAAGCTT ATTGATGTCA 
    CTTGGTCATT ACTCAATGAT CTTCTGGCTC CGTGGTATGG CGTTTCATCT 
    GGTTGACGCT GTTCTCCTAT TGAACTTACG CGCTCTTATA GCTTCATTTT 
    GGAAGCGGAT AAAAACTTAT GCCAAGTTAC GAAAGGCACT TAGTTCACTC 
    GACGGAGCAC TTCCAGATGC TACATATGAT GAAATCTGTG CATACGACGA 
    TGAGTGTGCC ATCTGTAGGG GACCAATGGC TCGAGCTAAA AAGTTATCCT 
    GCAACCATCT ATTTCATCTA GCTTGCTTGC GATCATGGTT GGACCAAGGA 
    TTAATGGATG GTTACTCATG TCCAACTTGT CGAAGACCTC TCTTTCTGTC 
    ATCTCAAGGT CACACAAGAT CTACAGCAGA GGTAGGAAAC GTCCAGTTAA 
    TTGCAGAACA ACTTAATGCG GGGTTGAATC AGCAGAGGGT TCCTGGTCAT 
    GAACATCCTA TTGAACATCA GAATCCTGCA GATGCTGTTT GGAGAGGTGC 
    TGGTCTTGAT TCTAGCTGGG CACCACCATG GTCGAGCCCT GGGATGGACA 
    ATCCCAGTTC TTCCAGCGCC GTGACATCAG TGGGGCTTAG TGGAGTTCAG 
    ATGATGATGA GGCAGTTGAC TTCAGTGACT GATAATTATG GGCATCCAGA 
    TGCCACCTGG AGTCTATGGC CTGAGCCAGT TGCAGGATCT TCGGTTGTTC 
    CATCCTCTTC CTCGAGGCCT GATGGTGCTT CAGCTGCTGG CTTGCGGTTC 
    CGAGGCACTG CAAGACCCGC GAATGGTAGC ATGTCGGAGG TTCTCTCCAT 
    GGTAGATAGA GTACGAGAAG TTTTACCCCA TATCCCTGAC GAGCTAATTA 
    TTGAGGATCT GATGAGAACA AATAATATAA ACGCTACTGT AAATAATCTT 
    CTGCTGATGC AATAAAAGAT AAACCAGCAA TACAACATAT AAGCACGATG 
    TTTACCGGCT ATAAGTTCAT ATATGAAAGG ATGTATAGTT AAGTTAAAGA 
    CGAACCTGGG TGTCCAAGCA CCTCTTGGTT CTTGTAATAA GTGTTTTTTT 
    TAGTTTATTT CTTCCCAATG TACTAAAATG CCCCGGCTTT GTATAGTAAT 
    CACAGCTGTA TAATATTATG CTCAATATGG CGTAGGATAG CATGTGTAGA 
    AGATGTTATC ATCCAAATAA AAGTGTGTTT GTCATCCCAA TAAAATTATT 
    TGTCGATGAG AGCCC

    Gene models with high sequence identity

    1. AT4G25230.2 [+] show detail - RPM1 interacting protein 2
      E-value: 2e-128; Score: 457.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ubiquitin system component Cue 0.000000054
    HMMPfam Zinc finger, C3HC4 RING-type 0.0000002
    Gene3D no description 0.00000088
    HMMPanther SYNOVIOLIN-RELATED 1.7e-72
    HMMPanther SYNOVIOLIN-RELATED 1.7e-72
    HMMSmart Zinc finger, RING-type 0.0000049
    HMMSmart Ubiquitin system component Cue 0.000055
    superfamily RING/U-box 0.00000000000002
    ProfileScan Zinc finger, RING-type 12.032
    ProfileScan Ubiquitin system component Cue 13.011

    See the detailed result >

    AT4G25230.2

    Model type
    Protein coding
    Short Description
    RPM1 interacting protein 2
    Curator Summary
    RPM1 interacting protein 2, has a CUE domain which is sufficient for the interaction with RPM1.Positive regulator of RPM1 and PRS2 mediated hypersensitive response.Functions as ubiquitin ligase and binds to RPM1.
    Computational Description
    RPM1 interacting protein 2 (RIN2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: RPM1 interacting protein 3 (TAIR:AT5G51450.1); Has 2005 Blast hits to 1973 proteins in 236 species: Archae - 0; Bacteria - 2; Metazoa - 699; Fungi - 246; Plants - 674; Viruses - 9; Other Eukaryotes - 375 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR