R90463

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90463

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90463

Determination of introduced cDNA(s)

  • J033032K11 - Rice Full-length cDNAs - Original: J033032K11

    full reading [+] show sequence

    Nucleotide sequence: J033032K11 - full reading 
    GGCCGCTGCT GAAGAAAAAC GCACATCCTT CCTTCCTAGC ACCAACTCGC 
    CACCCAATTA GGCCATTACC TTCCAAAATT CTCCCATCCA ATGGCGCTAC 
    GCCTCTCCGT CTCCTCCTCG CACGGGCCGG CTTCCTCGCC GGCCATCTCC 
    ACATGCCGCC CCGCCGCCTG CGGGCGCTTC CCCGCCTTGC TCGGCGGCGG 
    TGTGGCTTCT CAGAGGAGGA GCCTGACGGT GGTGTCTGGC CCTGAGACAA 
    GGGCGGTGAT CCCCGTGAGG TCGAGCGGCT CGGACACCGC CACTGTTGGG 
    GCCGAGGCGG AGGCGGTGGC CGTGACCGGG CAGGTGACGG AGGTGAACAA 
    GGATACCTTC TGGCCAATTG TCAAGTCGGC AGGGCCCAAG GTCGTCGTCC 
    TCGACATGTA CACCCAATGG TGCGGCCCTT GCAAGGTGAT GGCACCGAAA 
    TTCCAGGAGA TGTCCGAGAA GGACCAGGAC GTTGTGTTCC TCAAACTCGA 
    CTGCAATCAA GACAACAAGT CTCTTGCAAA GGAGCTGGGC ATAAAGGTTG 
    TGCCAACATT CAAGATTCTC AAGGACGGGA AGGTCGTCAA GGAGGTCACA 
    GGTGCCAAAC TAGATGAATT AATCCAAGCG ATCGAGACGG TGAAGTCAAG 
    CTGAGGAATG CCCTGAAAAT TTGCATCAGT TAGCTTGTTG TCACTAGTGT 
    ACGTTATGGG TGAACCACCA GTTATTGAAG TGGGTATTCG ACATGGAGAC 
    AAACAGTTAA TCTAGTTCTT CTGCCTATGA TGATTTATCA AGCATCCAGA 
    ACAATATACG GCCATTTATA TGGAATGCAC CATGTAAATA ACTATTTCCA 
    ACGTCATGAT GATCTGTTTT CTAATCTTAC TGATTTGCAA GTGAACATTG 
    TATTCATGGT TAGCAAAATT TCAAAATATA TCAACAAATT TCCAGCTG

    Gene models with high sequence identity

    1. AT5G16400.1 [+] show detail - thioredoxin F2
      E-value: 2e-43; Score: 172.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Thioredoxin-like 14.494
    Gene3D Thioredoxin fold 4.4e-25
    HMMPfam Thioredoxin domain 1e-26
    superfamily Thioredoxin-like fold 5e-30
    FPrintScan Thioredoxin-like subdomain 3.5e-05
    FPrintScan Thioredoxin-like subdomain 3.5e-05
    FPrintScan Thioredoxin-like subdomain 3.5e-05
    HMMPanther THIOREDOXIN F-TYPE 8.7e-49
    HMMPanther Thioredoxin, core 8.7e-49
    PatternScan Thioredoxin, conserved site 0

    See the detailed result >

    AT5G16400.1

    Model type
    Protein coding
    Short Description
    thioredoxin F2
    Curator Summary
    Encodes an f-type thioredoxin (Trx-f2) localized in chloroplast stroma.
    Computational Description
    thioredoxin F2 (TRXF2); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: positive regulation of catalytic activity; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin F-type 1 (TAIR:AT3G02730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR