S01220

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: S01220

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: S01220

Determination of introduced cDNA(s)

  • J013000K13 - Rice Full-length cDNAs - Original: J013000K13

    full reading [+] show sequence

    Nucleotide sequence: J013000K13 - full reading 
    GGCCCAGCAT CTTCCTATTT ATACCCTCCA CCCATCGACC GACGATCCAT 
    CACCGGCGAC GAGGAGACAC TCACTGATAT AATCAAGCTA GCTAGCTTAA 
    TCACCTAGCT ATCCGTCAGT TTAGCTAGAT ATGGCTGCAG TTAACTGCAA 
    GGTGGTGGTC GCCGTGATTG TGGTGGCGAT GGTGGTTGCG GCGCCGGGGG 
    CGTCGGCGGC GATAACGTGC GGGCAGGTGG GATCGGCGAT CGCGCCGTGC 
    ATCTCGTACG TGACGGGGAG GAGCGGCCTC ACGCAGGGAT GCTGCAACGG 
    AGTGAAGGGG CTGAACAACG CCGCCCGCAC CACCGCCGAC CGCCAGGCGG 
    CCTGCCGCTG CCTCAAGAGC CTCGCCGGCA GCATCAAGTC GCTCAACCTC 
    GGCACCGTCG CCGGCGTCCC CGGCAAGTGC GGCGTCAACG TCGGCTTCCC 
    CATCAGCCTC TCCACCGACT GCAACAAGGT CAGCTAGATC AATTAATCCT 
    GCTTGGATCG ATCGATCGAG CTTAACACGC TAGCTCGATC GGAGTTGATC 
    AGCTAGTAAT TAAGCACGTA TTTGCTACAG CATATATGAA CAAAGTAATT 
    AAAATAACAC CTGCGGCAGA CATGCAGCGC TCCATTCTCT CTCTGTATCA 
    GCTGTATACT TTATGTTGCA CGCTCCCTGT GTGCATGTTC TATCTTAATT 
    TTCTTCAGTA TGTACACGAT CTGTGTGTAC TACGTGT

    Gene models with high sequence identity

    1. AT5G59320.1 [+] show detail - lipid transfer protein 3
      E-value: 7e-23; Score: 104.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Plant lipid transfer protein/Par allergen 0
    Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 1.1e-31
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.000000000000007
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 2.7e-31
    HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.000000076
    FPrintScan Plant lipid transfer protein/Par allergen 2.9e-29
    FPrintScan Plant lipid transfer protein/Par allergen 2.9e-29
    FPrintScan Plant lipid transfer protein/Par allergen 2.9e-29
    FPrintScan Plant lipid transfer protein/Par allergen 2.9e-29
    FPrintScan Plant lipid transfer protein/Par allergen 2.9e-29

    See the detailed result >

    AT5G59320.1

    Model type
    Protein coding
    Short Description
    lipid transfer protein 3
    Curator Summary
    Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
    Computational Description
    lipid transfer protein 3 (LTP3); FUNCTIONS IN: lipid binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: cell wall, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 4 (TAIR:AT5G59310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR