S01528

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: S01528

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: S01528

Determination of introduced cDNA(s)

  • J013086L24 - Rice Full-length cDNAs - Original: J013086L24

    full reading [+] show sequence

    Nucleotide sequence: J013086L24 - full reading 
    GGAAAGCGCT CTCGACTCTC GCCGCCGCCG CCGCCGCCGC GAGCCGCGTC 
    GTGCGGGAAC GCGAGGGTTT TTCCAGGGGG ATGGATTTGG GGTCGTGCTA 
    CCTCGGCGGC AACGCCGACG CGGTGGAGTT CTGCCCGCAC CGCCCCTTCC 
    GCCACGTCCT CGCCGCCGCC ACCTACACGC TGCAGGAGCA GGGCGGGGAG 
    CGGCAGGACC GCGCGGGCAG CGTGTCGCTC TTCGCCGTCG ACGTCGGCGA 
    GGAGGACGCG CCCCGGAGGC TCCGGCTGCT CCACACGGTG GAGACCGCCG 
    GGGTGTTCGA CATGAAGTGG AGCCCCGTGG CGCCTCTGCT CGCGCAGGCC 
    GACGCCCACG GCCGCCTCGC GCTCTGGCGC CTGGAGCAGG AGGACGGATC 
    GGACAAAGGT GCTGTTCTCA GGGATGTCTG TTCTGGAGAC ATTTCTTCTT 
    CGATGTGCTT GTTTGTGGAC TGGAACCAAA CTGCCAAGGC ACTTTCCGTT 
    GGATTATCGG ATGGTTCCCT GTCTGTGGTT TCCATGAGGG AGGACCGCTT 
    GGAGGTATCA GAACAGTGGA CTGCTCATCA GTATGAAGTG TGGACTTGCT 
    ATTTTGATCG TGCAAATCCA CACTTGTTAT ACAGCGGATC AGACGACTGC 
    TCCTTCAGCT GCTGGGACTT GCGACAGAAC CCATCAAATG CTGTGTTTCA 
    GAACAAAAAG TCGCATAATA TGGGTGTCTG TTGCATTGCT CAGAATCCAC 
    TAGAGGGGAA CATGCTACTT ACTGGAAGCT ATGATGAATT TCTCAGAGTT 
    TGGGACATAA GATCAATGGT GAAACCCGTT AATGTGAAGT CCCTAAATTT 
    AGGGGGTGGT GTATGGAGGA TTAAATATCA TCCTCTTATT GCAGATGTTG 
    TCTTGGCTGC ATGCATGCAC AATGGGTTTG CCATTGTTAA AGTAGGTACT 
    GGGGATGCTG CAGTAGTGGA AACATATTGC AAGCATGAGT CCTTAGCATA 
    TGGTGCGGAT TGGCAGATAA ATGAAGGTGC AGAACAGAAC AAGAATTTTT 
    CAGTTGTTGC TACCTGTTCA TTTTATGATC GACTCCTCCG TGTGTGGCAA 
    CCGGAGAACC TAGGCAATCT TTAAGAGTGA AAGTGCCATT GCACTCAGTT 
    CAAGTATCAC TATGTGGACT TGTTTCCAGG TAGCTCCTCA AAGTTGTGCT 
    GATTTATTTA AAGACATGAG CTTTTGGTAG AATCATGTCT GTTCCATAGC 
    TTGTCATTCA CATATATTTG TGTGATGCCA GCTTTCCCGT CGCAAAACTA 
    TATATTTGTA TGGTCCTCAA AGATGTTTCC TGTTGATTAT ATTTGAAGTA 
    CTCCATTTTG TAGATTATAT TGACGCTTTA ACAACAATCT TTACATC

    Gene models with high sequence identity

    1. AT5G63010.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 2e-96; Score: 350.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan WD40 repeat, conserved site 0
    Gene3D WD40/YVTN repeat-like-containing domain 6.7e-27
    ProfileScan WD40 repeat 2 11.277
    ProfileScan WD40-repeat-containing domain 14.977
    HMMSmart WD40 repeat 14
    HMMSmart WD40 repeat 0.0027
    HMMSmart WD40 repeat 0.002
    HMMSmart WD40 repeat 210
    HMMPfam WD40 repeat, subgroup 0.00065
    HMMPfam WD40 repeat, subgroup 7.8e-05
    HMMPanther RETINOBLASTOMA-BINDING PROTEIN-RELATED 1.7e-26
    HMMPanther WD40 REPEAT FAMILY 1.7e-26
    superfamily WD40 repeat-like-containing domain 9.2e-34

    See the detailed result >

    AT5G63010.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G32950.1); Has 4234 Blast hits to 3983 proteins in 322 species: Archae - 2; Bacteria - 280; Metazoa - 1738; Fungi - 841; Plants - 754; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR