S02030

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: S02030

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: S02030

Determination of introduced cDNA(s)

  • J023078B20 - Rice Full-length cDNAs - Original: J023078B20

    full reading [+] show sequence

    Nucleotide sequence: J023078B20 - full reading 
    GAGCTCCCGC GCGCGCTGTT CCGGCCGCCG CCGAGCTGGT CGGAGTCGGA 
    GGCGACCGCC GATAGCCCTG CCGGCGAGAG ATCGATCGAT CGGCGTCGCC 
    GATCCGACAT ATCCAATGGT TGAGTCGGGG AGCGAGGCGG CGGCGGCGAC 
    GGCGGCGGCG GTGCTGACGG CGCCGCTGTC CCTGGAGGGC GGCCTCGCGG 
    CGGAGCTCCG GCCGGCGAAC CTCGTGCAGC GCGTGCTCAG CCTCTTCCGC 
    AACGTCCGAC CCGGCTCCGA TCTCTCTCAC TTTCAGCTGC CTGCTACGTT 
    CAACCTGCCG AAGTCGCAGC TCCAGTTATA CGGCGAGGGA GTGTACTGCG 
    TCGGAAAAGA CTACCTGCGG CGGTGCGCGA AGGGGAGCGA CGCCGTCGAG 
    CGGTTCGCGG CGGTCGTCGG CTGGAGCATC TCGACGACGA GGCCTCCCAT 
    CTTCGGCTTC GCGCCGTACA ACCCCGTTCT TGGAGAGACC CACCATGTCT 
    CCAGCGGATC ACTCCATGTT CTTCTCGAGC AGGTGTCTCA TCGTCCTCCG 
    GTCTCTGCAC TGCATGCCAC TGACGATGAC GGTGAGATCG AGCTCGTCTG 
    GTGCCAAAAC CCAATCCCGA AATTCCACGG CACAAGCGTG GAAGCGACAG 
    TGAAAGGCAT GAGGCACGTC AAGCTTCTGA AATTCAGCGA GAATTACGAG 
    ATCGACTGCC CAAACCTGCT CATCAGGTTG CTGCCTGCTC CATCAGCGGA 
    GTGGTCTGGG ACAGTCAGGA TCGTCTGCAA GGAGTCCGAG CTCGAAGCAG 
    AGTTGATCTA CTACAGGAGC AACGCTTTCC TGGGACTAGG TGGCGATCCA 
    AGATGTGTTA AGGGTAAGAT ATTCAGCTCA AGATCAGGAG AGATCATCTG 
    CGAGATTGAT GGACATTGGG ATCGGATCGT GTCGGCGAAG GATGCGAAGA 
    CCGGGAAGGT GTCGGTTCTG TACGATGCTG AATCCGCCAT TGCTGACCTC 
    AAGACACCTG TGGTCAGAAA CCAAGAGGGC GTGTCACCTT CAGAATCTGT 
    GGTGGTTTGG GGCGAGGTGA GCGATGCCAT CCTGAAGAAA GACTGGGAGA 
    GATCTAGTCA GGCGAAGCGA CGAGTGGAGG ACACGGCGAG GAGGCTAGAC 
    AGAGAGAGGA ACGACAAGGG AGAGGTCTGG ATTCCCAAGC ATTTCTCGCT 
    GTCTCAGGAC AAGAACGGCA GCTGGGAATG CTCGCCGCTG GAGAAATCTG 
    TGCCTCCAGC TCCGATCATT GTCCCCTCAT GACTGTAGAT TACATGTAAC 
    AGATGATCCT ATATATACTA TATAAATCTA TAACATAGCT GATGATTTGA 
    TTTT

    Gene models with high sequence identity

    1. AT4G25850.2 [+] show detail - OSBP(oxysterol binding protein)-related protein 4B
      E-value: 6e-102; Score: 368.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther OXYSTEROL BINDING PROTEIN-RELATED 4.9e-136
    HMMPanther Oxysterol-binding protein 4.9e-136
    HMMPfam Oxysterol-binding protein 1e-53
    PatternScan Oxysterol-binding protein, conserved site 0
    Coil coiled-coil 0

    See the detailed result >

    AT4G25850.2

    Model type
    Protein coding
    Short Description
    OSBP(oxysterol binding protein)-related protein 4B
    Computational Description
    OSBP(oxysterol binding protein)-related protein 4B (ORP4B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4A (TAIR:AT4G25860.1).
    Link
    InterPro Scan - TAIR