S02030

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: S02030

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: S02030

Determination of introduced cDNA(s)

  • J023078B20 - Rice Full-length cDNAs - Original: J023078B20

    full reading [+] show sequence

    Nucleotide sequence: J023078B20 - full reading
    GAGCTCCCGC GCGCGCTGTT CCGGCCGCCG CCGAGCTGGT CGGAGTCGGA 
    GGCGACCGCC GATAGCCCTG CCGGCGAGAG ATCGATCGAT CGGCGTCGCC
    GATCCGACAT ATCCAATGGT TGAGTCGGGG AGCGAGGCGG CGGCGGCGAC
    GGCGGCGGCG GTGCTGACGG CGCCGCTGTC CCTGGAGGGC GGCCTCGCGG
    CGGAGCTCCG GCCGGCGAAC CTCGTGCAGC GCGTGCTCAG CCTCTTCCGC
    AACGTCCGAC CCGGCTCCGA TCTCTCTCAC TTTCAGCTGC CTGCTACGTT
    CAACCTGCCG AAGTCGCAGC TCCAGTTATA CGGCGAGGGA GTGTACTGCG
    TCGGAAAAGA CTACCTGCGG CGGTGCGCGA AGGGGAGCGA CGCCGTCGAG
    CGGTTCGCGG CGGTCGTCGG CTGGAGCATC TCGACGACGA GGCCTCCCAT
    CTTCGGCTTC GCGCCGTACA ACCCCGTTCT TGGAGAGACC CACCATGTCT
    CCAGCGGATC ACTCCATGTT CTTCTCGAGC AGGTGTCTCA TCGTCCTCCG
    GTCTCTGCAC TGCATGCCAC TGACGATGAC GGTGAGATCG AGCTCGTCTG
    GTGCCAAAAC CCAATCCCGA AATTCCACGG CACAAGCGTG GAAGCGACAG
    TGAAAGGCAT GAGGCACGTC AAGCTTCTGA AATTCAGCGA GAATTACGAG
    ATCGACTGCC CAAACCTGCT CATCAGGTTG CTGCCTGCTC CATCAGCGGA
    GTGGTCTGGG ACAGTCAGGA TCGTCTGCAA GGAGTCCGAG CTCGAAGCAG
    AGTTGATCTA CTACAGGAGC AACGCTTTCC TGGGACTAGG TGGCGATCCA
    AGATGTGTTA AGGGTAAGAT ATTCAGCTCA AGATCAGGAG AGATCATCTG
    CGAGATTGAT GGACATTGGG ATCGGATCGT GTCGGCGAAG GATGCGAAGA
    CCGGGAAGGT GTCGGTTCTG TACGATGCTG AATCCGCCAT TGCTGACCTC
    AAGACACCTG TGGTCAGAAA CCAAGAGGGC GTGTCACCTT CAGAATCTGT
    GGTGGTTTGG GGCGAGGTGA GCGATGCCAT CCTGAAGAAA GACTGGGAGA
    GATCTAGTCA GGCGAAGCGA CGAGTGGAGG ACACGGCGAG GAGGCTAGAC
    AGAGAGAGGA ACGACAAGGG AGAGGTCTGG ATTCCCAAGC ATTTCTCGCT
    GTCTCAGGAC AAGAACGGCA GCTGGGAATG CTCGCCGCTG GAGAAATCTG
    TGCCTCCAGC TCCGATCATT GTCCCCTCAT GACTGTAGAT TACATGTAAC
    AGATGATCCT ATATATACTA TATAAATCTA TAACATAGCT GATGATTTGA
    TTTT

    Gene models with high sequence identity

    1. AT4G25850.2 [+] show detail - OSBP(oxysterol binding protein)-related protein 4B
      E-value: 6e-102; Score: 368.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther OXYSTEROL BINDING PROTEIN-RELATED 4.9e-136
    HMMPanther Oxysterol-binding protein 4.9e-136
    HMMPfam Oxysterol-binding protein 1e-53
    PatternScan Oxysterol-binding protein, conserved site 0
    Coil coiled-coil 0

    See the detailed result >

    AT4G25850.2

    Model type
    Protein coding
    Short Description
    OSBP(oxysterol binding protein)-related protein 4B
    Computational Description
    OSBP(oxysterol binding protein)-related protein 4B (ORP4B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4A (TAIR:AT4G25860.1).
    Link
    InterPro Scan - TAIR