F00106

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00106

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Seed::light green

Original: F00106

Determination of introduced cDNA(s)

RAFL08-12-F21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-12-F21 - Resource: pda17584

full reading [+] show sequence

CCCCGGTTTT TCTCTCTCTC TCTCTCCCCT CAAACTTAAA TTCACATTTT 
AATACTTGTT ACTTCAACTA TAATAATAAT AATAATCTTT CTTCATTATA 
TATTTTCCTC TCCTCTCAGA TCTTCTCTCT CACCATCTTC TCTTGAGATC 
AAGATTGAGT ATTCTTGTCT CAAGAATCGA TACTCGAGAG CTCTTATGGA 
CCAAAATGGT CATAACGACG AAGCAGAAAC AGTTTCATGC GGCAACGGCA 
ACTGCAAAAG CAAGATCGTG CCTGGAGATG ATCACGGTGG AGATGAGAGT 
AGTGGTACCA AGAGAAGGAA GAAGAGAAAA ACGCAACAAA AGACAATGAA 
ACGACGTGAA TTAATGTCGT ATTGTGAGCT ACCGGAGTAC ATGAAAGACA 
ACGAATACAT ATTGAATTAT TACAGAGCTG ATTGGTCCAT TAGAGATGCT 
TTCTTCAGCG TATTTAGTTT CCACAATGAG TCCCTCAATG TTTGGACACA 
TTTGATTGGT TTTATCTTCT TTGTGGCACT AACCGTCGCC AATATTATTC 
ATCACGACGG ATTCTTCCCC GTGGATGCAA AGAGTCCAGG GAATGTAACA 
AGATGGCCCT TCTTCGTTTT CTTAGGAGGC TCAATGTTCT GCCTACTCGC 
AAGCAGCATT TGTCACCTCT TCTGTTGCCA CTCAAAAGAG CTTAATGTCT 
TCCTTCTCCG AATAGACTAT GCCGGTATCA CCGCCATGAT CATCACTTCC 
TTCTTCCCAC CAATCTTCTA CATCTTCCAG TGCACTCCTC GGTGGTACTT 
CATCTACCTC GCAGGCATCA CATCCATGGG AATCTTCACA ATCATCACAC 
TTTTCACCCC ATCACTTTCC GCTCCCAAGT ACCGAGCTTT CCGCGCTTTG 
CTCTTTGCCT CCATGGGGCT GTTTGGGATT GTCCCAGCTG CCCACGCGCT 
AGTGGTCAAT TGGGGAAACC CGCAAAGGAA CGTGACGCTC GTGTACGAGT 
TGCTTATGGC AGTGTTCTAT CTTGTTGGAA CAGGATTCTA CGTAGGGAGA 
GTGCCAGAAA GGCTTAAACC GGGATGGTTT GATCGTGTGG GACATAGTCA 
TCAGATCTTC CATGTGTTCG TTTTGTTGGG TGCTTTGTCT CACTATGCAG 
CTGCTCTCTT GTTCTTGGAC TGGCGTGACC ACGTTGGTTG TTAAACCATA 
TATTTGTAAT TCTTTTAAAT ATAATATTAT TAATTTGTTG TATCGTGGTG 
AACAAAATTG TAATAACCCA TTTGTTTTAA ATTGAATTGT AATTCAACTA 
AAAAAAAAA

Gene models with high sequence identity

AT5G20270.1 [+] show detail - heptahelical transmembrane protein1
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Hly-III related	4.2e-71
HMMPanther	ADIPONECTIN RECEPTOR-RELATED	1.2e-192
HMMPanther	Hly-III related	1.2e-192

See the detailed result >

AT5G20270.1

Model type: Protein coding
Short Description: heptahelical transmembrane protein1
Curator Summary: heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors
Computational Description: heptahelical transmembrane protein1 (HHP1); FUNCTIONS IN: receptor activity; INVOLVED IN: response to salt stress, response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical transmembrane protein2 (TAIR:AT4G30850.2); Has 2727 Blast hits to 2656 proteins in 794 species: Archae - 0; Bacteria - 1143; Metazoa - 823; Fungi - 356; Plants - 236; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
Link: InterPro Scan - TAIR