F00124

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00124

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Original: F00124

Determination of introduced cDNA(s)

  • RAFL16-10-G04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-10-G04 - Resource: pda19393

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-10-G04 - full reading 
    TTCTTCTCTC GATCTCGGAT TTTTCTGATC GATGGCGGTT CCCACACTCT 
    GTATCGCCGA TGGAATCTAC CCCACTGCTT TTTTCTACCG GAATTCAGTC 
    CGACGACTGA CCTCCGTCGC GCATGATCGG TTTACGAACC CGAAATTCGG 
    AATCGATGGA CGTCTACGGA ACGGACCGAA GGTGACGGCA ACGGTGAATC 
    CATATACGTA CACGGAGGCG GCGCAGCCCG AAGAGCGGAA GAGTTTGACG 
    GATTTTTTGG TGGAAGCTAG AGATTTCGTT AGATCTGACG GCGGAGATGG 
    TGGTCCACCT CGGTGGTTCT CTCCCTTGGA ATGTGGCGCA CGCGCTCCAG 
    AATCTCCTCT TCTTCTCTAC TTACCTGGGA TCGATGGTAC TGGATTAGGG 
    CTCATTCGCC AGCATAAGAG GCTTGGAGAG ATATTTGACA TATGGTGCCT 
    TCACTTTCCA GTCACTGATC GTACCCCTGC TCGAGATCTT GTGAAGCTCA 
    TTGAGAGAAC AGTTAGGTCA GAGTACTTCC GTTTACCAAA GAGACCCATA 
    TACATAGTTG GAGAATCTAT TGGAGCTTGT CTTGCTCTAG ATGTTGCAGC 
    CAGTAACCCT GACATTGATC TTGTCTTGAT TCTAGCTAAT CCAGTCACAC 
    GTGTCAACAA CTTCATGTTG CAACCTTTAT CGAGTCTATT GGAAATTTTG 
    CCAGACGGAG TTCCCAGCTT CCTGGAGGAG AATTTTCGGT TTGAACAAGG 
    TTATCCGTTT GCAGCAATGT TCGAGACTAT GCTGAATGAA ACTGATGCCG 
    CACAGATCGG TGGAGGGCTA TTAGGAGACC TCTTTGCAAC TTCAGTTAAC 
    CTGCCGACTC TGGCTAGGAT CTTTCCAAAG GACACACTTC TATGGAAGCT 
    TCAACTGCTT AAGTCTGCTT CAGCATCTGC TAAGTCTCAC ATGTACACAG 
    TCAAAGCCCA AACACTTATA CTTTTGAGTG GACGCGATCA GTGGTTACTA 
    AACAAGGAAG ACATTGAGAA ACTCCATTGT ACATTGCCGA ATTGTGAAGT 
    CCGTAAGTTC GAGAATTACG GACAGCTTCT CTTTTTGGAG GATGGGGTAG 
    ATCTGGTGAC TATCATCAAG TGTACTTATT ATTATCGCCG TGGAAAATTG 
    CTTGATTACG TTTCTGATTT CATTCTGCCT ACCCCATTTG AGCTCAAAGA 
    GTATGAAGAA TCACAAAGAT TGCTAACTGC TATAACCTCC CCAGTCTTTC 
    TCTCAACTCT AGATAACGGT ACAGTAGTAA GATCACTTGC GGGAATACCT 
    TCAGAGGGAC CGGTTCTCTA TGTTGGCAAT CACATGTTGC TTGGTACCGA 
    ATTGCGTCCA GCAGCAATTC ATTTCCTGAA AGAAAAGAAC ATTCTGTTGC 
    GAGGACTTGC ACATCCAGTG ATGTTTGCCA AAAAATATGG CTCAAAACTC 
    CCTGATATGC ATATGTTCGA CTCAGTTAGG ATGATAGGCG CAGTTCCTGT 
    CTCAAATATC AATTTCTATA AACTACTTCG CTCAAAGGCT CATGTGGTTT 
    TGTATCCTGG AGGTGTCCGT GAAGCTTTGC ACAGAAAGGG TGAAGTATAC 
    AAGTTGTTTT GGCCAGAACA TTCAGAGTTT GTAAGGACCG CATCTAAATT 
    TGGAACAAAA ATCATTCCTT TTGGGGTTGT TGGTGAAGAT GATCTCTGTG 
    AAGTGGTCTT CGATTACAAT GATCAAATGA AGATCCCTTT CCTGAAGAAT 
    CTTATAAAAG AGTTATCACA AGACTCTACT TACTTGAGGA ACGGTGAAGA 
    AGGAGAAGTA GGAAACCAAG ATTTGCATAT GCCTGGAATA GTTCCCAAGA 
    TGCCGGGACG GTTTTACGTA TACTTTGGGA AACCAATTTA CACAGAAGGT 
    AGAGAGGACG AGCTAAATGA TAAAGAGAAA GCTCATGAGG TTTACTTGCA 
    GGTCAAGTCT GAGGTAGAAA GATGTATGAC CTATTTGAAG ATCAAAAGAG 
    AAGGTGATCC TTATAGAAAC ATTTTAGCGA GGTCCCTCTA TCACTTCTCA 
    CATGGTTTCT CTTCCCAAGT CCCAACCTTT GACCTCCGAA ATCAATAATT 
    TTAGTTACTG GATTTGTGAC TTAATTAACT TTGTGGAATT TGGATATGTT 
    ATTGTAACTT CTAAAAGTAC AAGGCTGTTG ATGTAGAAAT TGAGTAAGTT 
    CGGGGTGTTA TGTTAAAAAT TCATGCAAAA AA

    Gene models with high sequence identity

    1. AT5G41130.1 [+] show detail - Esterase/lipase/thioesterase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Diacylglycerol acyltransferase 2e-07
    Gene3D no description 2.3e-07
    HMMPanther ALPHA/BETA HYDROLASE 0.00011
    HMMPanther ALPHA/BETA HYDROLASE RELATED 0.00011
    superfamily alpha/beta-Hydrolases 3.6e-17

    See the detailed result >

    AT5G41130.1

    Model type
    Protein coding
    Short Description
    Esterase/lipase/thioesterase family protein
    Computational Description
    Esterase/lipase/thioesterase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Diacylglycerol acyltransferase (InterPro:IPR007130), Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: Esterase/lipase/thioesterase family protein (TAIR:AT5G41120.1); Has 500 Blast hits to 489 proteins in 151 species: Archae - 0; Bacteria - 285; Metazoa - 8; Fungi - 0; Plants - 158; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR