F00331

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00331

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00331

Determination of introduced cDNA(s)

  • RAFL09-17-O18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-17-O18 - Resource: pda01862

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-17-O18 - full reading 
    GAAAAAGCTG TTGTCAAGAG AAGAAGGAAG AGAGGAGATA AAAAGCCAAA 
    CAAATGGCGT TCAATATCAT AACACCTGGT CGTGTTTATT CAGCCACGTC 
    TCTCACTTTC GTTTCCACCA TTAAAGCTGC TTTCGTTAAA CCTCCTTTGG 
    CCTCTCCGTC TCGTCGTAAC CTCCTTCGTT TCTCATCATC TCCTTTGTCA 
    TTTCCGTCGC TCCGTCGAGG TTTCCACGGT GGTCGTATTG TGGCAATGGG 
    TTCTTCTGCT CCTGAATCGG TCAATAAGCC GGAAGAAGAG TGGCGTGCGA 
    TTCTTTCTCC TGAACAATTT AGGATTCTCA GACAGAAAGG CACTGAATAT 
    CCAGGAACTG GAGAATACAA CAAAGTATTC GACGATGGCA TCTATTGTTG 
    TGCAGGATGT GGAACTCCTC TCTACAAATC CACCACCAAA TTCGACTCTG 
    GTTGTGGCTG GCCAGCTTTC TTTGATGGAC TCCCCGGAGC TATAACCCGA 
    ACCCCTGATC CAGATGGGAG ACGAATCGAG ATCACATGTG CTGCTTGTGG 
    AGGACATCTT GGTCACGTTT TTAAAGGAGA AGGTTTCCCT ACTCCTACCG 
    ATGAGCGACA CTGTGTAAAC AGTATCTCTC TCAAGTTCAC ACCAGAGAAT 
    CCGACCCTGT AATAATATGA TCACAGAAAA AAAGACGTGA TAATATAGGT 
    GTGTTGTGTG ATGCTTCTGT CTCTCTCTCG TACTGTGTTT TTGTCTTTTT 
    TCTGTGAGAC TAATGTTTAC TTTTGATGGT TAATAATAAG GTCGTTGAAA 
    AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT4G21860.3 [+] show detail - methionine sulfoxide reductase B 2
      E-value: 0; Score: 99.75

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Mss4-like 1e-49
    HMMPfam Methionine sulphoxide reductase B 1.5e-53
    HMMPanther METHIONINE SULFOXIDE REDUCTASE 4.4e-60
    HMMTigr Methionine sulphoxide reductase B 1.4e-46

    See the detailed result >

    AT4G21860.3

    Model type
    Protein coding
    Short Description
    methionine sulfoxide reductase B 2
    Computational Description
    methionine sulfoxide reductase B 2 (MSRB2); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase B3 (TAIR:AT4G04800.1).
    Link
    InterPro Scan - TAIR