F00336

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00336

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00336

Determination of introduced cDNA(s)

  • RAFL05-17-L23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-L23 - Resource: pdz87513

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-17-L23 - 5 prime EST
    AAAATCCTCA GCCGCATCTC ACTTCTCATT CTCTAGAAAA AATGGCTTCG 
    TCTTGTCTCT TCAATGCCTC TGTATCGTCC TTAAACCCTA AACAAGACCC
    CATCCGCCGC CACCGGTCAA CCTCTCTCCT CCGCCACCGC CCCGTCGTCA
    TCTCCTGTAC CGCCGATGGC AACAACATCA AAGCCCCGAT CGAGACAGCG
    GTCAAGCCTC CTCACCGTAC CGAGGATAAC ATTCGAGATG AGGCTCGTCG
    TAATCGTTCC AACGCCGTGA ATCCATTTTC AGCTAAATAC GTTCCGTTTA
    ATGCAGCTCC TGGATCCACG GAGTCTTACT CTNTTGACGA GATCGNGTAC
    CGTAGCCGCT CCGGTGGTTT GCNTGATGTC

    Gene models with high sequence identity

    1. AT4G29840.1 [+] show detail - Pyridoxal-5'-phosphate-dependent enzyme family protein
      E-value: 0; Score: 98.95

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-17-L23 - 3 prime EST
    GATTCAAACT TTGCGATAGA ACTTTATTGG AAAACTGAGA AACAGATAAA 
    GATCACAGAG AGATGAGTTG AAGAGTAACG CAAACAAACG TCTAAAAGTT
    TTCAAAAAAC AAAACAGCTA AAGATTATGG TCTTGTCTCT TATGACGTAA
    GTGTATTACT TCCTAAGTAA CTCTTGAGAA CATCCATGAC AGCTCCGAAA
    TCTGCTTTCA CATCAACAGG AGGATTGGAG AATCTGCAAG CCATGTCAGG
    GATGGCATTG GAGTGATAAT CTATCTTAGA CTGAGTAAAC TTCAACCCAT
    GAGCAGTACT CACTACCATA GTTCGATCAG TCGGTGCAAT CACTCCTTGA
    TTCCTCAGCT TGAACAGAGC AGTTAGAGCA ACACCTGTAT GAGGACAGAT
    AAACATTCCT GTCGAATCCG CTTGAGCCAT CGCATCCATC AGCTCCTCCT
    CTGTGGCTTC TTCTACAATA CCATTGCACT TCTTGAGAGC GTACACAGCT
    CTATCGATGG AGACAGGGTC ACCGATCTGA ATCGCA

    Gene models with high sequence identity

    1. AT4G29840.1 [+] show detail - Pyridoxal-5'-phosphate-dependent enzyme family protein
      E-value: 0; Score: 99.81

    AT4G29840.1

    Model type
    Protein coding
    Short Description
    Pyridoxal-5'-phosphate-dependent enzyme family protein
    Curator Summary
    threonine synthase
    Computational Description
    METHIONINE OVER-ACCUMULATOR 2 (MTO2); FUNCTIONS IN: threonine synthase activity; INVOLVED IN: threonine biosynthetic process, metabolic process, cellular amino acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Threonine synthase (InterPro:IPR004450), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Serine/threonine dehydratase, pyridoxal-phosphate-binding site (InterPro:IPR000634); BEST Arabidopsis thaliana protein match is: Pyridoxal-5'-phosphate-dependent enzyme family protein (TAIR:AT1G72810.1); Has 6824 Blast hits to 6824 proteins in 2025 species: Archae - 409; Bacteria - 4266; Metazoa - 101; Fungi - 24; Plants - 83; Viruses - 0; Other Eukaryotes - 1941 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR