F00338

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00338

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00338

Determination of introduced cDNA(s)

  • RAFL09-69-M10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-69-M10 - Resource: pda06673

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-69-M10 - full reading 
    ACTTCCGTCA GCTATAGCTT TGGAGAAACT GCATCAATGG CGTTGAGATT 
    GACATCGCTA AAACGCGCCG CGGTTGAGTC CTGTCGCATT TTGGAAACCC 
    GAAGCTTAAG TCATGTCGCT GCGATGCCTT CCCCCTTGAA CGGAGCTTTT 
    GATCGCCCGA TTTCTATGCC GCCGCTGGTT TTACCTGAGT TCGATCAGAA 
    TCAACCGGGT TTGATCGAAG AAAAGAGCTT CGGGTTCGGG CTTCCTAGTT 
    TTGCTTTTAA TGGATCCATG GAGCTAATGG CTGTGCCTAA GAAGAAGATT 
    TCTAAACACA AGAGAGGGAT AAGAAATGGT CCAAAGGCTC TTAAGCCTGT 
    TCCTGTGATC ATCCGTTGCA GGAGTTGCGG GCGAGTCAAG CTGCCACATT 
    TCTTCTGTTG CAGCGGTGAG CGGCTAAACC CTACTGAGTA AGGCAATTCG 
    AACAACTGGT CATGGTTTCC AATATGATTA CTCCTTGTTG GATATCAAGA 
    GGATAAAATC TTGGCTTTCT TAGTAGTACA CTAGAATGAT AAAAGACTTA 
    GTTGATGCTG TTTTGGCAAA TTATTGTATG CTGCAAGATC AATATTCTCA 
    TGCTTCTCTT GACAAATTAT GTTATTGTCA TTGCTTGTTG CAAAGTGTAG 
    GATTATCTCA TTCACTTTTA TTTGTGCTCT TAGATTTGGA TTCAACAGCT 
    AAATATATTC GAAATGGATA AATATATTCA C

    Gene models with high sequence identity

    1. AT1G26740.1 [+] show detail - Ribosomal L32p protein family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein L32p 0.00062
    HAMAP Ribosomal protein L32p 10.931
    HMMPfam Ribosomal protein L32p 2.2e-10

    See the detailed result >

    AT1G26740.1

    Model type
    Protein coding
    Short Description
    Ribosomal L32p protein family
    Computational Description
    Ribosomal L32p protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32p (InterPro:IPR002677); BEST Arabidopsis thaliana protein match is: Ribosomal L32p protein family (TAIR:AT1G69485.1); Has 123 Blast hits to 123 proteins in 51 species: Archae - 0; Bacteria - 41; Metazoa - 0; Fungi - 21; Plants - 49; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR