F00401

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00401

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00401

Determination of introduced cDNA(s)

  • RAFL09-19-L12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-L12 - Resource: pda05528

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-L12 - full reading 
    AAAAACCCTA ACATTTCAGA AAGACGATTA CTCGATAACA CAGAAGAGAG 
    ATTAAATGGT AAATCTCATG CGGAAGTTCG CAAAATCGAT TGGTAGACCG 
    GGAACAGAAT TTTGGAGAGG GGAAGATATG ATAAGCGCAT TACCTGATCA 
    TTTGCTATGT CATATACTTA TTTTTCTTTC TACTGATGAA TCTGTTTTGA 
    CGAGTGTTTT GTCTTCTAGA TGGAGAAATC TCTGGAAATG GGTTCCTAGG 
    TTAGACTTAA ACACCTCTGA TTTCCCATAC CCTAATGACG TAACTTGTGC 
    GGCTTTCATC GACAAGTTTC TGAATCTTTA TAACGAATCC TACTTGCGGG 
    AATTCAAGTT AAGAATTGAC CAAGCTAACT TTCGCAGTAA TGTATCTCTT 
    TATGAGCCGT GTCTTGGTGT AGTGATTAAG AAGCCCAACG TTCGGCATTT 
    CCAAGTTGAG AGTGATCTGC TTGAGCATTG GTGCACTAGT GAGATACGAT 
    TAACCCTTTC TGCTTGCCAG GCATTGGTAT GCTTAAAGCT CCATTTAGTA 
    TGGCTGAATG ACTTTGAGTC TCTATCTTTG CCCTGTCTCA AGATCATGTA 
    CTTGGAAGAC GTTGTATTTC CTAGCGATGC GGCTGCAGAG ACGCTAATCT 
    CGTGCTCTCC GGTTCTTGAA GATTTAAAAC TAAGCCTCCA TAGAGATGAT 
    GTTGTAGTTG TTCTACGTGT CTACTCACAG TCACTAAAGA GCTTCACTCT 
    AAAACGGGCG GTTCCTGTTT ATGCTATAAA CGGTGCACAT ACAGTGTTGG 
    TCGATACTCC GAGGCTTGTG TATATGAGTC TCATAGATTA CCAATTCAAA 
    AGCTTCAAGA TAATCAGCAT GAGTGACTAT GTCAAGGTTG ATCTTGATGT 
    CGACTTTGAA CTGATGCGTG ATGAATTATC GGAAAGAAAT ATTGTCTATG 
    ATCTTCTCAA CAATTTTTCA GGTGTTAGAA ATATGACCAT CTCGTGGACA 
    ACTCTTAAGT TTATCCATAG ATTCCATGAC ATGAACCCAC TACCCAAATT 
    TCGTGACTTG ACCCGTTTGC GTGCAACTAT GTCCTCAGAC GCCTCTCTGG 
    AAGTGTTGCG AATCGTTCTT GAGAGCTGCC CGAAGCTGAA ACACTTTCAC 
    TTCACCTTGG AATTGGTTAA TGATTTTCCA GAGGCAGTAA TAACTGGATT 
    CTCGAGAGTG TTACCTCGTT GTTTGGTATT TTCCCTTGAA TCCGTTGAAA 
    TGGAAAGCCC GATCACGGAG AAAGCAACGG AACTGAAACT GGTAAGATAC 
    TTTCTGGAGA ACTCAGCAAC ACTCAAGAAG CTTGTTCTAC TTCTGAATCA 
    TGAGTCTACT GGAGAGAAAC ACGAGCCTGG TGTCTTGAAA CAACTCATTG 
    AATCTCCAAG ACGCTCTAGT TTGTGTCAAT TTGAAGTTCT TGCAGTGCCT 
    CCAAATCCGG AACCGTGGTG GATTTATGTA AAACCCCAGA GGTTTCTTTA 
    GTGCTATCGC TGATGAAATT CTCATACCTT CCTTTATGTT ACTCTATTTT 
    TATTACGTCT ATGTTGTAAC CTACATCAAA GTTGCATTTG ACAAAGGAAG 
    GGGACGGTCT AGTCCAAAAG TTTGCCACTA GGTTCCACTA CCTCATGTCG 
    TTCGTTTGAA TCACCATCTT GTGCAAGTAG CTTGAATCCA TTCTTTTACA 
    TCCGCTTGGA ATTTGTAAAA CTACTCTGGA AGAGTTTTTG GTATTTTGC

    Gene models with high sequence identity

    1. AT5G18770.1 [+] show detail - F-box/FBD-like domains containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart FBD-like 3.89999861795218e-17
    HMMPfam Leucine-rich repeat 2 0.048
    HMMPfam F-box domain, cyclin-like 0.31
    HMMPfam FBD 0.00000000000650000000000001
    superfamily F-box domain, Skp2-like 0.00000000029

    See the detailed result >

    AT5G18770.1

    Model type
    Protein coding
    Short Description
    F-box/FBD-like domains containing protein
    Computational Description
    F-box/FBD-like domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G18780.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR