F00408

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00408

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00408

Determination of introduced cDNA(s)

  • RAFL09-20-P20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-20-P20 - Resource: pda08018

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-20-P20 - full reading 
    ACCCCCCCGA AAACAATGAC GGCGAGTGAG ACTATCGCCA CCGCGATAAA 
    TCAGATTGAT GAGAAGAAGG AAAAGCTAAA GAAAGCTTTC GACGATCTTC 
    AAGCTCATCG CTCTCTCCTT TCACCGTCTT TCTCACTTTC CTGGTCTGAG 
    ATCGATTCTC ACTTTTCCTC TCTCCAATCC TCCCTTGCTA GCCGTTTCCG 
    CCTCCTCCAC TCTACATCTC CTTTGGAACA TGATTCGTAT AGAATCGACG 
    CTTCTGATGC AGGGAAATCG TCGTCTTCGG AGGAGGTATC GGAGCAACCC 
    GTTGTTGAGC CGGAGTTGAG AGCCTTGTGT GAGAAGATTG ACGGAATTGG 
    TTTGATTAAG TATTTGATTA GGATATGGGA TGATGAAACT CCTCTCAATC 
    AGGAAGTTTC TGCAGCGATT CGTTACTCTC CGGATACGGC GTCCATGGTG 
    CTTGACGCGA TTGAAGGTTC GAACTACACA CCGTCATCAT CGGGAAGATC 
    ATTCGATGTA AGGAGAGTTT TCGTTTTGTT AATGGAAGTT TTGATTGAGA 
    TCAATGCGAA TATCACTGTT GATACGAGAA ATAGAGCTAA GAAACTGGCT 
    TACCATTGGA AATCTAAGGT TGGTGTCAAG CCTTTCGAGG CGTTAGTGTT 
    TCTGCATTTG GTCGCAGCTT TTGAATTAGG ATCAGAATTT GACACAGAGG 
    AGCTTTCTGA TTACGTTTTC ATGATCGCTA AGTATAAGCA AGCAACTTTG 
    GTTTGTAACA AGATTGGTGT AGATAGGAAA AGAGTTGGGA AACTCATCAA 
    GACTCTCTTG GATTCTGGTA AACCAATTTT AGCAGTCAAA TTCATGTATG 
    AGTGTGGGAT GACTGATGAA TTTGAGCCAA TCCCTGTTTT GAAATCTTAC 
    ATTAAGGACT GTAGAGAAGC TGCTCTTAGA GTTTGCGTGG AAGATAACTA 
    CTCTCTCAAG TCGCAGAACG AAGCCTCTGA TAAAGAAGTC AGTGCCTTGA 
    AACCATTGAT CAAAATCATC AAAGATCAGA ACCTTGAATC AGAGTTTACT 
    CAGGAGAAAG TTGAGGAACG TGTAGAAGAG CTGGAGAAAA ATAAGGCATT 
    GAGGAAACGC AACACGACTA ATCCTCCCAA GCAAGAGCCA CAGCAAAAGG 
    GGAAAAAGCG GACTAGAGAC TGCAAAAATG GGTCACAAGT TCCAGTTCCG 
    AGTCAGCAGC TACTTTCTAG ACCAGAAGCT CTTCTTATGC CTGAGCATAG 
    TCATCATGGC TTACAGTTGA ACCCTTATGG TCTTATGACC TCAGCATTTT 
    CTGGTGTTGT TGTGAACCCA TTAACTGGGC TCTTTGGTTC AGGTGCAACT 
    CCTCAATCTC TTTACTATGC TCAGCAAACT GGATATGTGT TGCCGCCTCA 
    ATACCACCCG CCTTATTATT CTCAGTAGCT AGCTGCATCT CGACAATAAG 
    ATCTTAATCT CCTCAATGTA AAATGTTATC TTTGTAGAAT ATTTGCCTTG 
    ATGGAAAGTA AAAAAATCAT TCTAACAC

    Gene models with high sequence identity

    1. AT5G16320.1 [+] show detail - FRIGIDA like 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Frigida-like 1.6e-86
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT5G16320.1

    Model type
    Protein coding
    Short Description
    FRIGIDA like 1
    Curator Summary
    family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004884
    Computational Description
    FRIGIDA like 1 (FRL1); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA like 2 (TAIR:AT1G31814.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR