F00410

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00410

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00410

Determination of introduced cDNA(s)

  • RAFL05-08-N01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-08-N01 - Resource: pda00918

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-08-N01 - full reading
    GGGAAAGAGC AGAAGAAATT TGCAGAAGAG AGAAAAACAA AAATGGCGGT 
    TCTTTGCTCG TCTTCGACGG TGATACTCTC TTCTTCTTCC GTGAAATCCT
    CCGGAAGTGA GAGAAAGTCT CCGTTTTTAG GGTTCTCTTT AACGGCTATC
    TCGAAGCCGT CGGTACGAGT CGGCATTTAT GCGAATTCGA AAAGAGGATT
    GCAAGTGAAG TGTGAAGCTG AGCCGACGAC GACGACTTCT CTTGTTCCGG
    CGAATCAACG ATGGATGTTC GACGAAGAAG AAGCTAATGG CCCTGACATC
    TGGAACACGA CATGGTATCC AAAAGCTTCA GACCATGTGA ACACGGACAA
    GCCCTGGTTT GTGGTTGATG CAACTGACAA AATTCTTGGT AGATTGGCAT
    CGACAATTGC TAATCACATC CGTGGGAAGA ATCTTGCCTC TTACACTCCT
    AGTGTCGACA TGGGAGCTTT TGTGATTGTG GTGAATGCTG AGAAAGTTGC
    TGTATCTGGA AAGAAGCGTA ACCAAAAGCT GTACAGGAGG CATTCAGGAC
    GACCTGGTGG TATGACAGTA GAGACATTTG ATCAATTGCA GCAGAGAATT
    CCTGAAAGAA TCGTTGAGCA TGCTGTTCGT GGAATGCTTC CAAAGGGACG
    GCTTGGGAGA GCTCTGTTCA ATCACCTGAA GGTGTACAAA GGCCCTGACC
    ATCCTCACGA GGCCCAGAAA CCGCTTGATC TGCCTATCAG GGACAAGAGA
    ATACAGCTGC AAAAATAGAA GCTCCACCAC TGTTCCATTA TCGCCAAGCG
    CAGAGAGTTT TTTCTTCTCA GGTTTCTGTA GTTTCTTCAT CCCAAAACCA
    GAGGAGGCTT TACAGATTCT TGTTTTCGCT TCTATCAACT CTGTTATGCT
    ACAAAACTTT CTAATTTGAA ATATTTCTCG TTATTTTTTT TTGCCAAAAA
    AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT1G78630.1 [+] show detail - Ribosomal protein L13 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein L13, bacterial-type 6.9e-76
    superfamily Ribosomal protein L13 1.3e-43
    PatternScan Ribosomal protein L13 0
    HMMPfam Ribosomal protein L13 5.1e-50
    HMMPanther Ribosomal protein L13, bacterial-type 9.7e-116
    HMMPanther Ribosomal protein L13 9.7e-116
    Gene3D Ribosomal protein L13 4.4e-39

    See the detailed result >

    AT1G78630.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L13 family protein
    Computational Description
    embryo defective 1473 (emb1473); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: thylakoid, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT3G01790.2); Has 8725 Blast hits to 8725 proteins in 2839 species: Archae - 248; Bacteria - 5258; Metazoa - 358; Fungi - 293; Plants - 251; Viruses - 0; Other Eukaryotes - 2317 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR