F00438

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00438

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00438

Determination of introduced cDNA(s)

  • RAFL09-26-G02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-26-G02 - Resource: pda08090

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-26-G02 - full reading
    AATATAACAG AAAAATAAAT ATCTTGTCTG AATCAGAGAG AGAGCTCTCA 
    ACAACCAAAG CTTTGGACTC TCAGGCCAGG AAGACTATGG GATTGGGCGG
    CGATCAATCC TTTGTTCCCG TCATGGATTC CGGCCAAGTC CGCCTCAAGG
    AGCTCGGCTA CAAGCAAGAG CTCAAGCGCG ATCTCTCGGT CTTCTCCAAT
    TTCGCCATCT CCTTCTCCAT CATATCGGTG CTCACTGGTA TCACCACCAC
    CTACAACACC GGCTTAAGAT TCGGCGGCAC TGTCACTCTG GTCTACGGAT
    GGTTCCTGGC CGGCTCCTTC ACAATGTGCG TTGGGTTATC TATGGCCGAG
    ATCTGCTCCT CTTACCCTAC CTCCGGTGGT CTCTACTACT GGAGTGCTAT
    GCTCGCTGGC CCTCGTTGGG CTCCTCTTGC CTCTTGGATG ACTGGCTGGT
    TCAACATCGT TGGTCAGTGG GCAGTGACGG CCAGCGTTGA CTTCTCTCTG
    GCACAGTTGA TTCAGGTGAT CGTCCTTCTC TCCACCGGCG GTAGAAACGG
    CGGCGGTTAT AAAGGATCAG ACTTTGTTGT GATTGGTATC CATGGTGGGA
    TCCTCTTCAT CCACGCTCTT CTCAACAGCC TCCCCATCTC CGTCTTGTCT
    TTCATTGGAC AGCTTGCTGC TCTTTGGAAT CTCCTCGGGG TTTTGGTGCT
    CATGATTCTG ATTCCTTTGG TTTCTACGGA AAGAGCAACC ACTAAGTTTG
    TCTTTACCAA TTTCAACACT GATAATGGCC TTGGCATCAC CAGCTACGCT
    TACATATTCG TTTTGGGACT CCTCATGAGC CAGTACACCA TTACAGGGTA
    TGATGCCTCT GCCCACATGA CAGAAGAGAC AGTCGACGCA GACAAGAACG
    GGCCCAGAGG AATAATCAGT GCAATTGGTA TATCAATTCT GTTTGGATGG
    GGTTATATAT TGGGCATAAG CTATGCCGTC ACAGACATAC CTTCTCTTCT
    GAGTGAGACC AACAACTCTG GTGGGTATGC CATTGCTGAG ATCTTCTACT
    TAGCTTTCAA GAATAGGTTT GGGAGCGGTA CTGGTGGAAT CGTGTGCTTA
    GGCATTGTTG CGGTTGCTGT GTTTTTCTGT GGCATGAGCT CTGTCACCAG
    CAATTCCAGG ATGGCGTATG CGTTTTCGAG AGATGGAGCG ATGCCAATGT
    CGCCGTTATG GCACAAAGTG AACAGCAGAG AGGTCCCCAT TAATGCGGTT
    TGGCTCTCTG CTCTCATATC ATTTTGTATG GCCCTCACCT CACTGGGGAG
    CATAGTGGCG TTCCAAGCAA TGGTGTCGAT CGCAACGATT GGACTGTACA
    TAGCATACGC AATCCCGATT ATATTGAGAG TGACGCTTGC GCGCAACACC
    TTCGTACCTG GACCATTCAG CCTGGGAAAA TACGGAATGG TAGTCGGGTG
    GGTGGCAGTC CTGTGGGTTG TAACCATATC AGTCCTCTTC TCCTTACCCG
    TGGCATATCC CATAACAGCA GAGACACTCA ACTACACTCC GGTGGCAGTT
    GCTGGTTTGG TGGCCATAAC CCTCTCATAT TGGCTTTTCA GTGCCCGCCA
    CTGGTTTACG GGTCCCATCT CCAACATTCT TAGCTGAAAC AACGTTTCAG
    GGGTTGATTT ATAGTAAAGC CATTGTTAGC TAGCTGATAT TTACCCTTTT
    ATACATTCAA CAAGCAACGA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT2G01170.1 [+] show detail - bidirectional amino acid transporter 1
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Amino acid permease domain 1.5e-25
    HMMPanther AMINO ACID PERMEASE-RELATED 5e-212
    HMMPanther Amino acid/polyamine transporter I 5e-212
    HMMTigr Amino acid permease subfamily 0
    HMMPIR Amino acid/polyamine transporter I 2.2e-34

    See the detailed result >

    AT2G01170.1

    Model type
    Protein coding
    Short Description
    bidirectional amino acid transporter 1
    Curator Summary
    Encodes a bidirectional amino acid transporter that can transport ala, arg, glu and lys but not GABA or pro with both export and import activity. Its expression is localized in the vascular tissues suggesting a function in amino acids export from the phloem into sink tissue.
    Computational Description
    bidirectional amino acid transporter 1 (BAT1); FUNCTIONS IN: arginine transmembrane transporter activity, L-lysine transmembrane transporter activity, L-alanine transmembrane transporter activity, L-glutamate transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid permease subfamily (InterPro:IPR004756), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); Has 15465 Blast hits to 15422 proteins in 1894 species: Archae - 296; Bacteria - 11987; Metazoa - 438; Fungi - 2169; Plants - 254; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR