F00451

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00451

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Original: F00451

Determination of introduced cDNA(s)

  • RAFL06-83-E03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-83-E03 - Resource: pda03848

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-83-E03 - full reading 
    ACTTGCATAA ACTAACTTGG TTCTCTTAGA TATTTCTTTA GAGTTAAATA 
    ATCATATTCA ATTTTTTTAA AAAGGATGTT AGAAGGGAAA GCAGTAATGG 
    GTGATACAGA TATGAAGCAA ACAATGAAGG AAGATGCTCT TAGTTTGGCC 
    TCCAAAGCCC TTGATTGCTT TGATGTCACC GAACCTACTC AAATTGCCCG 
    TTTCATCAAG AAGGAATTTG ATAGAAGTTA CGGATCGGGG TGGCAGTGCA 
    TCGTGGGGAC GCATTTCGGA TCTTTCGTGA CTCATTGCAG TGGCTGCTTC 
    ATCCATTTCT CAGTTGGCAG CCTTACCATT TTGCTTTTTA AGGGATCAGT 
    CGGTGAACCG GCCCCCCCGG ACCGATGCTC TAGCTAATTT AGACAGTATT 
    GTAAAATAAT CAAGTCCTTT TCGATTGATG TAGTGTTAAA GTTAAAGAGT 
    ATTCAAGTTC TTTCACTGTA ATATCAATCA TGATTCGTCG TTATGGATGT 
    CTTCAATAAC AAGAAAACAC TGCTTTCTTA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT4G27360.1 [+] show detail - Dynein light chain type 1 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Dynein light chain, type 1/2 1.4e-27
    Gene3D Dynein light chain, type 1/2 2.2e-25
    HMMPfam Dynein light chain, type 1/2 7.7e-33
    HMMPanther Dynein light chain, type 1/2 1.3e-38

    See the detailed result >

    AT4G27360.1

    Model type
    Protein coding
    Short Description
    Dynein light chain type 1 family protein
    Computational Description
    Dynein light chain type 1 family protein; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: Dynein light chain type 1 family protein (TAIR:AT3G16120.1); Has 1221 Blast hits to 1219 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 628; Fungi - 103; Plants - 253; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR