F00501

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00501

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00501

Determination of introduced cDNA(s)

  • RAFL09-39-M04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-39-M04 - Resource: pda06219

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-39-M04 - full reading 
    AGCTCTCAAA CAAAGATATT GCTACTGCCT CACCAAATTT TCCTCCGGAA 
    AGAGAGTGAG AAAATTTCCA AGAGAAAGAG GAGAGAGAAT GGCTGGAGAA 
    GAAATAGAGA GGGAGAAGAA ATCTGCAGCA TCTGCAAGAA CTCACACCAG 
    AAACAACACT CAACAAAGTT CTTCTTCTGG TTATCTGAAA ACGCTTCTCC 
    TGGTAACGTT CGTCGGAGTT TTAGCATGGG TTTATCAAAC AATCCAACCA 
    CCACCCGCCA AAATCGTCGG CTCTCCCGGT GGACCCACCG TGACATCACC 
    GAGGATCAAA CTGAGAGACG GAAGACATCT GGCTTACACA GAATTCGGAA 
    TCCCTAGAGA CGAAGCCAAG TTCAAGATCA TAAACATCCA CGGCTTCGAT 
    TCTTGTATGC GAGACTCGCA TTTCGCCAAT TTCTTATCGC CGGCTCTTGT 
    GGAGGAATTG AGGATATACA TTGTGTCTTT TGATCGTCCT GGTTATGGAG 
    AGAGTGATCC TAACCTGAAT GGGTCACCAA GAAGCATAGC ATTGGATATA 
    GAAGAGCTTG CTGATGGGTT AGGACTAGGA CCTCAGTTCT ATCTCTTTGG 
    TTACTCCATG GGTGGTGAAA TTACATGGGC ATGCCTTAAC TACATTCCTC 
    ACAGGTTAGC AGGAGCTGCC CTTGTAGCTC CAGCGATTAA CTATTGGTGG 
    AGAAACTTAC CGGGAGATTT AACAAGAGAA GCTTTCTCTC TTATGCATCC 
    TGCAGATCAA TGGTCACTTC GAGTAGCTCA TTATGCTCCT TGGCTTACAT 
    ATTGGTGGAA CACTCAGAAA TGGTTCCCAA TCTCCAATGT GATTGCCGGT 
    AATCCCATTA TTTTCTCACG TCAGGACATG GAGATCTTGT CGAAGCTCGG 
    ATTCGTCAAT CCAAATCGGG CATACATAAG ACAACAAGGT GAATATGTAA 
    GCTTACACCG AGATTTGAAT GTCGCATTTT CAAGCTGGGA GTTTGATCCG 
    TTAGACCTTC AAGATCCGTT CCCGAACAAC AATGGCTCAG TTCACGTATG 
    GAATGGCGAT GAGGATAAGT TTGTGCCAGT AAAGCTTCAA CGGTATGTCG 
    CGTCAAAGCT GCCATGGATT CGTTACCATG AAATATCTGG ATCAGGACAT 
    TTTGTACCAT TTGTGGAAGG TATGACTGAT AAGATCATCA AGTCACTTTT 
    GGTTGGGGAA GAAGATGTAA GTGAGAGTAG AGAAGCCTCT GTTTAAGTCA 
    ATGTGGTTTT TAAGAATAAT TAATTGCTTG CAATGCTAAA CTAGTTATGA 
    TCAACAATCA AATCAAAGCA ACTTTAGTCG AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT3G48410.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily alpha/beta-Hydrolases 1.2e-38
    HMMPanther ALPHA/BETA HYDROLASE RELATED 2.2e-07
    HMMPfam Alpha/beta hydrolase fold-1 2.2e-13
    Gene3D no description 8.2e-26

    See the detailed result >

    AT3G48410.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G36290.1); Has 1039 Blast hits to 1035 proteins in 267 species: Archae - 10; Bacteria - 561; Metazoa - 10; Fungi - 51; Plants - 319; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR