F00515

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00515

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00515

Determination of introduced cDNA(s)

  • RAFL09-81-O15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-81-O15 - Resource: pdz88320

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-81-O15 - 5 prime EST 
    GGTAATTGCC GGCGAATTCT ACTAAAGAGT TTGTTGAGCA ATGAAGGGAG 
    CGACTCTCGT TGCTCTCGCC GCCACAATCG GCAATTTCTT ACAAGGATGG 
    GACAATGCCA CCATTGCTGG AGCTATGGTT TATATCAACA AAGACTTGAA 
    TCTACCAACC TCTGTTCAAG GTCTTGTCGT TGCTATGTCA TTGATCGGTG 
    CAACGGTCAT CACGACTTGC TCAGGACCGA TATCTGATTG GCTCGGCAGA 
    CGCCCCATGC TCATTTTATC ATCAGTTATG TATTTCGTCT GCGTTTGATA 
    ATGTTGTGGT CTCCCAATGT CTATGTTCTG TGCTTTGCTA GGCTTCTTAA 
    TGGGTTTGGT GCCGGGCTCG CGGTTACACT TGTCCCTGTT TACATTTCTG 
    AAACCGCTCC TCCGGAGATC AGAGGACAGT TAAATACTCT CCCTCAGTTT 
    CTTGGCTCTG GTGGAATGTT TTTGCCATAC NGNACGGT

    Gene models with high sequence identity

    1. AT1G20840.1 [+] show detail - tonoplast monosaccharide transporter1
      E-value: 0; Score: 99.58

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-81-O15 - 3 prime EST 
    GAGAGAAAAT TGAGTACTTA TTAGATTGAT TTTGACAACG AAACAAAGGA 
    AAAAAAAAAA AAAAAAAAAA GAAACAAAAA CGATATGAAG GTATCTGAAA 
    AACAAAACAA AAAGGGGATG AAGAGAATCT TTAGGTACAC AGAGCAATTG 
    ACGAAGAAGA AAGTTACAAG TTATATATCC TTAGAAGGAG CAGAAGCTTG 
    AGCTTGAGCT CCAAAGGCAA AGTAGTCTGT GATAACTTCC AAAGGCATGC 
    CTTTAGTCTC CGGGACTTTC ATGTAAACGA AGATCCATGA GATAACGCAA 
    ACCGCAGGGT AAATGCCTGA AAACACCAAC TAGTCCGATG GAGCTGAGGA 
    GAACGGGAAG TGAGTACGTG ACAATAATGT CTCCAATCCA AAAGACCATA 
    GCACATATGG

    Gene models with high sequence identity

    1. AT1G20840.1 [+] show detail - tonoplast monosaccharide transporter1
      E-value: 0; Score: 98.78

    AT1G20840.1

    Model type
    Protein coding
    Short Description
    tonoplast monosaccharide transporter1
    Curator Summary
    The protein encoded by this gene is found in the tonoplast (vacuole membrane) of Arabidopsis cells. The gene is expressed at highest levels in juvenile (sink) and adult (source) leaves, followed by flower tissues.
    Computational Description
    tonoplast monosaccharide transporter1 (TMT1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: plant-type vacuole membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: tonoplast monosaccharide transporter2 (TAIR:AT4G35300.4); Has 47782 Blast hits to 35006 proteins in 2411 species: Archae - 763; Bacteria - 22324; Metazoa - 7189; Fungi - 11789; Plants - 3723; Viruses - 0; Other Eukaryotes - 1994 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR