F00516

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00516

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00516

Determination of introduced cDNA(s)

  • RAFL09-84-K21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-84-K21 - Resource: pda08928

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-84-K21 - full reading 
    AACGCCGGCC TCTCTTTCTC TCTCTCCCCG CTTCTCTCGT CGATCGCTGA 
    CCATGGCCAA GGACAAACTC AAGCCTCTTC TCTCCTCTGA TGCTGCAGGT 
    GATATCGCTG ATACTCCTCT CCGAGAGAAG AAGCATAAGA AGAAGAGCAA 
    GAAGCGAGCT GAACCTGAAC CTGATATACC CTCTACACGA GATTCCGGTC 
    TTGATGAAGA TAGAGATGGA GTATTGGTAG ATGATACTCT AAATGAGCCA 
    ACGATAGGTG ATAAACTTGA GAGTCTTGAC TTATTAAATG GCGAAAAGGT 
    TAACAGTGAG GAGAGTAATA GAGATTCTGC TCCTGGCGAT GATAAGCCTC 
    CTACTGCTGC TTCTGTTAAC GTTCTTCTGA GACAAGCATT GCATGCCGAT 
    GATCGTTCTC TTCTACTCGA CTGCTTGTAC AACCGAGATG AGCAGGTGAT 
    TGCTAATTCG GTTGCTAAGT TGAATTCAGC CGAAGTACTC AAGCTTCTAA 
    ATGCCCTTCT ACCAATACTA CAATCAAGGG GTGCTATTTT GGCTTGTACA 
    ATTCCATGGA TAAAGAGTCT GTTACTTACT CATTCTAGTG GAATTATGTC 
    CCAAGAGTCA TCATTACTCG CTTTAAACAC CATGTATCAG CTCATCGAAT 
    CACGGGTTTC AACTATTCAT ACTGCCGTAG AGGTTTCAAG TGGCTTGGAC 
    TTGATTGTGG ACGACTTGGA TGAAGAAGAA GATGAAGGTC CCGTGATCTA 
    TGAGGACAAG GACAGTGATG AAGACGAAGA AGAAGGAATA GAGGAAGCAA 
    TGGAGACAGA TGAAGAGGCA GACGACTCAG CAGATGAAGC TGCTGATGGT 
    GTGAATGATT TTGAAGGATT TGACGACATG AGTGATTGAT AAAGCTCCTG 
    AAAATGGCAA AAGTTTTGAT TTGTGTGAGG CTGATGTTAG ATGTTAAGAA 
    TATGGCTAAA AGGTTCAATC TTTCGTCAAG AAGTCTGTAA TACGTAATGG 
    TTATATCGAT ATGAACGAGA CTTTGTGCT

    Gene models with high sequence identity

    1. AT1G15420.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast h...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G15420.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR