F00544

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00544

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00544

Determination of introduced cDNA(s)

  • RAFL06-75-K14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-75-K14 - Resource: pda03572

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-75-K14 - full reading 
    ACTTAAACGT GTCGTGTTAT TTGCGTGACT TGAAAAAAGA AGTGAGATAA 
    TTTTGAAAAC AATTTTTTAA TAATAATGCA AAACAGATCA ATCTCGCAAG 
    TCGCAACGAT GGCGACGAGC TCTTCCACCG AGAAACTGCC ACGTGTCCTC 
    ATCGTCAAAC GTCCCGACGC CATGGCTGTG TTAGGCGACG GATTCGTCGC 
    CTCCACCAAG TTCGAGATCC TCAAAGCCTT CGAGTCTCCG CTTCCTCTTC 
    CTGAATTCTT GGCCTATCAC TCTGACTCCA TCTCCGCCAT TATAGCCCCT 
    GTAGCTGCTC CGGTCACAGC CGATCTGATT CGCATCCTCC CTAATCTTCG 
    CTTGGTTGTT ACTACCAGCG CCGGCGTTGA CCATGTTGAC TTAGTTGAGT 
    GTCGTCGTCG AGGCATCTCC GTCGCCAACG CTGGCTCAAG CTTCTCGGAA 
    GATGTCGCAG ATACTGCCGT CGGTTTACTC ATCGACGTCT TCCGCCGCAT 
    CTCCGCCGCC AATCGGTTCG TTAAGCAACG GTTTTGGCCA CTCAAAGGCG 
    ATTATCCTCT CGGTTCCAAG GTTTGCAACA TAACTTGTGA AAAAATCAAA 
    TTAGCAACAA AAATGATTGT TAATGGTTCC CTCTAATTTG CAGTTGGGGA 
    GAAAGCGAAT CGGAATCGTG GGACTAGGAA GCATTGGCTC GAAAGTAGCG 
    ACAAGGCTCG ACGCCTTTGG TTGCCAAATT TCATATAGCT CAAGAAACAG 
    AAAACCATAT GATGTTCCAT ATCACTATTA CATGGATATA GAGGAGATGG 
    CAGCTAATAG TGATGCACTC ATAATCTGTT GTGAATTGAA TGAGAAGACA 
    TTGCGTTTGA TTAATAAAGA TGTTCTTTCT GCTCTGGGAA AGCGAGGAGT 
    GATCGTTAAC GTGGCTCGTG GGGCTATAAT CGATGAGGAA GAAATGGTGA 
    GATGTTTGAG AGAAGGTGAG ATTGGTGGTG CTGGTTTGGA TGTTTTTGAA 
    GATGAGCCTA ATGTTCCGAA GGAGCTTTTT GAATTGGATA ATGTTGTTTT 
    CTCTCCACAT AGTGCTTTTA TGACATTGGA AGGTCTT

    Gene models with high sequence identity

    1. AT2G45630.1 [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 3.4e-19
    Gene3D NAD(P)-binding domain 3e-40
    superfamily Formate/glycerate dehydrogenase catalytic dom 7.6e-26
    superfamily NAD(P)-binding domain 1.1e-41
    HMMPanther GLYCERATE DEHYDROGENASE 1.5e-100
    HMMPanther 2-HYDROXYACID DEHYDROGENASE 1.5e-100
    HMMPanther GLYCERATE DEHYDROGENASE 5.4e-94
    HMMPanther 2-HYDROXYACID DEHYDROGENASE 5.4e-94
    HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 2.1e-16
    HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 6.1e-45

    See the detailed result >

    AT2G45630.1

    Model type
    Protein coding
    Short Description
    D-isomer specific 2-hydroxyacid dehydrogenase family protein
    Computational Description
    D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: NAD or NADH binding, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 6623 Blast hits to 6621 proteins in 1548 species: Archae - 250; Bacteria - 4438; Metazoa - 370; Fungi - 171; Plants - 170; Viruses - 0; Other Eukaryotes - 1224 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR