F00635

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00635

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00635

Determination of introduced cDNA(s)

  • RAFL09-14-C10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-14-C10 - Resource: pda01649

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-14-C10 - full reading
    AAAAAATATA AATATTTTGA AAAATGAAAC TGGAGCTGGT GTTCATACCA 
    TCACCTGGTG ACGGACATCT CCGGCCATTA GTGGAGGTAG CTAAGCTTCA
    TGTTGACCGT GACGACCATC TCTCCATCAC CATCATCATC ATCCCTCAGA
    TGCATGGATT TAGTAGCAGT AACTCTTCTT CTTACATCGC TTCTCTCTCC
    TCTGATTCTG AAGAACGTCT TAGCTACAAC GTTCTCTCCG TCCCTGATAA
    ACCAGACTCC GATGACACCA AACCACATTT TTTCGACTAC ATTGATAACT
    TCAAGCCGCA GGTCAAAGCC ACGGTGGAAA AACTTACTGA CCCGGGTCCA
    CCAGATTCGC CGTCGCGTCT TGCTGGATTC GTGGTGGATA TGTTTTGCAT
    GATGATGATT GATGTCGCTA ATGAGTTTGG TGTTCCCAGT TACATGTTTT
    ACACATCCAA CGCAACGTTT CTTGGATTGC AAGTTCATGT TGAATACCTT
    TACGACGTTA AGAACTATGA CGTTAGTGAC CTCAAGGACT CGGACACTAC
    TGAGCTGGAA GTTCCTTGTT TGACTCGTCC TTTACCGGTT AAGTGTTTCC
    CCTCGGTTCT ATTAACCAAG GAGTGGTTAC CGGTTATGTT TAGACAAACC
    AGAAGATTCC GAGAAACTAA AGGTATTTTG GTAAATACAT TCGCTGAGCT
    TGAGCCTCAA GCTATGAAGT TTTTCTCCGG CGTAGATAGT CCTCTGCCTA
    CGGTGTACAC AGTTGGACCG GTTATGAATC TTAAAATCAA CGGTCCAAAT
    TCATCTGACG ATAAGCAATC GGAGATCCTA CGGTGGCTAG ACGAGCAGCC
    ACGTAAATCC GTTGTTTTCC TCTGTTTCGG AAGCATGGGA GGTTTCCGTG
    AGGGCCAAGC TAAAGAAATC GCAATCGCGC TTGAGCGAAG TGGTCACCGC
    TTTGTCTGGT CTCTTCGTCG TGCTCAACCA AAAGGATCGA TAGGACCTCC
    CGAAGAATTT ACGAATCTTG AGGAAATTCT CCCGGAAGGA TTCTTGGAAC
    GGACGGCAGA GATAGGAAAG ATTGTAGGTT GGGCTCCACA AAGCGCCATT
    CTAGCAAATC CTGCGATCGG AGGGTTCGTG TCGCATTGTG GATGGAACTC
    GACGCTAGAG AGTCTATGGT TCGGAGTTCC GATGGCTACG TGGCCGCTTT
    ACGCAGAGCA ACAAGTTAAC GCGTTCGAGA TGGTTGAGGA GCTAGGGCTA
    GCGGTGGAGG TCCGAAATAG TTTCCGAGGA GATTTCATGG CGGCGGATGA
    TGAGTTGATG ACGGCAGAGG AGATAGAGAG AGGGATCCGG TGTTTGATGG
    AGCAGGATAG TGACGTGAGG AGTAGAGTGA AGGAGATGAG CGAGAAGAGT
    CACGTAGCTT TAATGGACGG TGGATCTTCG CACGTTGCTC TTCTAAAGTT
    TATTCAAGAC GTCACTAAGA ATATCTCTTG AATCTAAGAT GATGAGGCTC
    GTCTCAGAAG ACGAAGAAAC ATATATATTA GCACTTATAA GAAAAAGACA
    TGTTGGCAGA GATTCAAGAC ATATATCTCT TGAACCAGAT TAGTAACTTA
    CTGTATTTTT TCTTTCTTTA CTTGCATTGA TATTAAAATT ACATTCACTG

    Gene models with high sequence identity

    1. AT3G21760.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 1.5e-24
    Gene3D no description 2.2e-16
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 4.2e-40
    PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
    HMMPanther UDP-GLUCOSYLTRANSFERASE 6.7e-132
    HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 6.7e-132

    See the detailed result >

    AT3G21760.1

    Model type
    Protein coding
    Short Description
    UDP-Glycosyltransferase superfamily protein
    Curator Summary
    Encodes HYR1, a UDP glycosyltransferase (UGT). HYR1 glucosylates hypostatin, an inhibitor of cell expansion in vivo to form a bioactive glucoside.
    Computational Description
    HYPOSTATIN RESISTANCE 1 (HYR1); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 71B6 (TAIR:AT3G21780.1); Has 7489 Blast hits to 7432 proteins in 389 species: Archae - 0; Bacteria - 261; Metazoa - 2177; Fungi - 28; Plants - 4962; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR