F00728

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00728

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00728

Determination of introduced cDNA(s)

  • RAFL09-39-I17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-39-I17 - Resource: pda17714

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-39-I17 - full reading 
    GAAAAATAAA ATTTATTTTT CTCTCTCGCT TGGTTCAACC GTGGTTGTTC 
    ATCGGAAAAA TATCTTCGGC TTCAATTTCG TTCGATTTAC CCTAAATTCT 
    CGACTAGTGT TCGTCAATCC CACTTCCAAT TCCACATTTC AAACCTTTTC 
    AGGAAGTTGA AATCAAAAGC ATGAATGCTT AAACAGTTTA CGCATTATTG 
    CGAAATGCAA GCCGAGCTGA TACCCGAAGG TCCTAACGGT GAGGGCCGTT 
    TATCAAACCA GAACAGCAAC CCTAATTTAC TCTCTTCTGC TTCTATCAGT 
    ATTACTCAGT TTCCTGCTAA GAAGCCGACT AGGCAATGGG CTGCTTGGAC 
    ACATCAAGAA GAGGAAAGTT TCTTCACTGC TCTTCGTCAA GTTGGAAAGA 
    ATTTTGAGAA GATAACTTCT CGTGTTCAGA GCAAAAACAA GGACCAGGTC 
    AGGCATTACT ATTATCGTTT AGTGAGGCGT ATGAACAAAC TTTTGGGCCC 
    GGATCTGAGC CTTGATGCCA AGAACCCAAA GGACACCAAT GCTGCAATGC 
    TACGATGGTG GTCTTTGCTT GAAAAGTATA GCTGCAAAGC TTCAAAACTT 
    CATCTCAAGC CCCGGAGATT CAAACTATTT ATAGAGGCCT TGGAACACCA 
    ATTGCTGAAA GACCGCAGAA AGAGCATAAG AAAACGGACT TGCCAGGGAG 
    AAAATCTCTC TTCTGCTTCC CTCGGAAACA TCTCAAGTCA TAGTAGAGAA 
    AGAGGATTGG ATAACCGTCC ATTTAAACTT ATTCTCTCCG ACGGCCAAAA 
    TGTTAAAAAG CTAGGGCCTG GAAGAGCATC TACCAAACAT GGTGAAAGCT 
    TAAGTGTCAA CCTTGGTGAC GAAAAAGAAG ACACAGCCTT TGGGAGAGGT 
    GGAAGGCAAC GGCGAAAACA AGGTTATAGA AAATGGGAAA AAGCTGCAAT 
    AGATGGGGTC TCTCTGGTTG CTGATGCTGC AGAGCATTTG GAACGAACAT 
    CAATTGACAA AGATATGGAT GATCAAACAG ATTTAGGTCC CACAAGATAT 
    TTAACCGGAA AGTCTCCACT TTCTCTATGC TCAGCTGGTG ATGTTCCTCT 
    CAGTGATGCC AATATGCAGT TTTCTGCCAA GCTTAAACTT CAGCTGTTCC 
    CGATTGATGA ATGTACTCGA AGATCCTTGG AAATGGATAA GCACAATCCG 
    CATCTTGAAC TTACTCTTAG TAATCGCAAG AAGATATCAT CTGTACTTGA 
    ACATCTCAAT CGCAAATGGG GAAGCTCAAG TTGTGCGACT GGAGAGCTAT 
    TGCTATTTCC TTACAACGCA CGAAAAGAAA CTGTAACGTG CCATCAGAGG 
    TGGACCCATG ACTCTTTTCT AAGCGCAGCA GAAGTGCATT CAATGGTCGG 
    AAGTCCTTCG GTTTTCCGCT TAAGGTATGG TTGGTTTGTC CATGATGCGT 
    CAGGTTCTAT TATTTCTCAA GTTCCAACTT CAGATCCTTG CCCTTCACTC 
    GAGGATGACA TGAATGTGGA TAGGTTGAAC GAGGTCAACA TGCTCCTTAC 
    TGAATCAGGA CCCTTGTCTG TGCATTCAAC TGCTGAACAA ACGACATCTG 
    TAGAGCCCAG TCAGGGTCTA GTATGTGCAT CTGGTGTCCA TGATCGTCCC 
    GCAAGATCTA GAGATGATTA TGAACCTGCT TCAACGAGTA TTACTCCACT 
    TGAGCATTTG AGCGGCGGTA ATGCACAATC ACCAGGAGAA TGGGCTGATA 
    GTCTTACTAA CATAAGTATA GGTGATCTAC TTTCTGAAGT GCCCGATGAC 
    ATAGATAGTG ATGGTGTTGA TCCACCTGCC ACCGAAGGTT CACATTACCT 
    CCTTCGAGAT GTCCCATTTA CCTCTGACTC TTTTGATGCT GCAATTGCTG 
    CTCATATACT AAGACACCAG AACAAGCCAA GTGCTCAACT ACCGCTGACT 
    TCTGGCTCTT CCTCTCTGTG GGATGATGAA GAAACACGTG ATGCCTTCTC 
    TTTCCAAAAA AAATCGTTTC GCAAATTCCA CCGAGCTGGC TAGTGTTGCT 
    TCTCCTAAAG GTGTTGGCAG AGTAAATGGA GAGCCTTCAC AGTTGGTGGA 
    GGCTTCATCC GGCGATGAGG GATCTTATAA CCCTCATGAC GATGGAGATC 
    CAATGGAAGA GGGTCCAGCA GACCCTCATA CGATGGATTC TCCAGGGAAG 
    ACCCCTTGTG GACTTGCGGA TGTATACTGG CCCGACTCGT TAGGACCACT 
    GGATTTAGAC ATTAGATCGT CAAAGTATAC AGATGATTTG ATCCTTAGTG 
    AGAGCCTCGG GGGATTGAGC CGTCTGATAG CAACCAGCCT TGATGCGTTT 
    CAGAACTGCT CGCTCTTTGG GTTCGACAAT AAGAAGGACA AGTCTAACAT 
    GGTATGAAAT GGAACCAAAG CTAAAGCATG GGGTCCAAAT GTTGATAGTT 
    GAAAAAGAAA GTGACTTCTT GCCTTTTGAA AAAAGAAACT TTTATCACCA 
    ACTGATAGCT TCACTGTACA AAAATTTGAT GTAACCTTTT ACTCTTCCTT 
    TCACACATTC TTTTGTGTTG ATACATGTTT CTCTGTGTAC ACTTTTACTG 
    TTAATTTACA TGTTTATTTG GTTAAAAAAA AAA

    Gene models with high sequence identity

    1. AT2G36960.1 [+] show detail - TSL-kinase interacting protein 1
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart SANT, DNA-binding 5.1e-06
    HMMPfam Myb, DNA-binding 9.5e-06
    ProfileScan SANT, eukarya 13.52
    superfamily Homeodomain-like 4.3e-09

    See the detailed result >

    AT2G36960.1

    Model type
    Protein coding
    Short Description
    TSL-kinase interacting protein 1
    Curator Summary
    Arabidopsis thaliana myb/SANT domain protein
    Computational Description
    TSL-kinase interacting protein 1 (TKI1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39380.1); Has 171 Blast hits to 167 proteins in 60 species: Archae - 0; Bacteria - 20; Metazoa - 45; Fungi - 2; Plants - 87; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR