F00801

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00801

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00801

Determination of introduced cDNA(s)

  • RAFL09-69-E12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-69-E12 - Resource: pda06641

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-69-E12 - full reading 
    ATCATCAATC TTTCAATCAC AAAAAAACAA CAACACCAAA AAAAAAACGC 
    ACACAATGCA GATTCACAAA CTCTGTTTTC TTGTTCTGTT CTTAGCTAAC 
    GCAGCTTTTG CCGTCAAATT CAACTTCGAT TCCTTCGATG GCAGCAACTT 
    GTTATTCCTA GGAGACGCAG AGCTTGGTCC TTCCTCTGAT GGTGTAAGCC 
    GATCCGGAGC TTTATCCATG ACCCGAGACG AGAACCCATT CTCTCATGGT 
    CAAGGTCTTT ACATCAATCA AATCCCATTC AAACCTTCAA ACACTTCTTC 
    TCCTTTTTCA TTTGAAACTT CTTTCACTTT CTCCATCACT CCTCGCACCA 
    AACCTAACTC CGGTCAAGGT TTCGCCTTCA TCATAACCCC GGAAGCTGAT 
    AACTCCGGTG CTTCAGATGG CGGATATCTC GGAATCCTCA ACAAAACCAA 
    CGATGGAAAG CCAGAGAACC ACATCTTGGC TATCGAATTC GATACTTTTC 
    AGAACAAAGA GTTTCTAGAC ATTAGTGGTA ACCATGTTGG AGTTAACATC 
    AACTCAATGA CTTCTCTTGT CGCTGAGAAA GCTGGTTACT GGGTTCAGAC 
    AAGAGTCGGG AAAAGGAAAG TTTGGTCGTT TAAAGATGTG AATCTTAGCA 
    GTGGAGAGAG GTTCAAGGCT TGGGTTGAGT TCAGAAACAA AGACTCTACG 
    ATTACGGTTA CACTCGCGCC TGAAAACGTT AAGAAACCTA AGCGGGCTTT 
    GATCGAAGCT CCCAGAGTGC TCAATGAAGT TCTTCTTCAA AACATGTACG 
    CCGGTTTTGC TGGTTCCATG GGACGTGCCG TTGAGCGTCA CGATATTTGG 
    AGCTGGTCGT TTGAAAACGC CGCCAAAAAC AACTAAACCG GTTTGGTTCT 
    GTTTATAGGC TAAGTATCGT TTGTTTTGTT TTTACTTTTT TAGTAATTGC 
    TGCATACTAC TCAGTGGTAA CTAGAGTGAA TAATTATGGT TTGAATAAAA 
    CAAGCCAAGT GCGTGGTTTC ATTACTCCGG ATTGCCATAT TTGTATTCAG 
    TCTGATTAAT TCAGATATCT CAATAAAAAG AACTTTGTTT TCATGC

    Gene models with high sequence identity

    1. AT3G16530.1 [+] show detail - Legume lectin family protein
      E-value: 0; Score: 99.91

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Concanavalin A-like lectin/glucanase, subgroup 4e-58
    HMMPIR Lectin 9.4e-73
    HMMPfam Legume lectin, beta chain 9.1e-74
    superfamily Concanavalin A-like lectin/glucanase 3.3e-65

    See the detailed result >

    AT3G16530.1

    Model type
    Protein coding
    Short Description
    Legume lectin family protein
    Curator Summary
    Lectin like protein whose expression is induced upon treatment with chitin oligomers.
    Computational Description
    Legume lectin family protein; FUNCTIONS IN: carbohydrate binding, binding; INVOLVED IN: response to chitin; LOCATED IN: apoplast, cell wall, nucleus, plant-type cell wall; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Lectin (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: Legume lectin family protein (TAIR:AT3G15356.1); Has 2027 Blast hits to 2006 proteins in 125 species: Archae - 0; Bacteria - 24; Metazoa - 0; Fungi - 0; Plants - 1986; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR