F00805

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00805

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00805

Determination of introduced cDNA(s)

  • RAFL09-41-H08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-41-H08 - Resource: pda06259

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-41-H08 - full reading 
    TCTCCTATAA ATCTCTCCGT CTTCTCTCTT CTCTCATTTC ACGTCGGAGA 
    TCATTTTCTC CTCCTCCGCC TCCGCCTCCA CCGCCACCGC CACCGCCGCC 
    GCCGACGACT TTTCTCACTT ACTCAACACC AGAGATCTTG GTTTAGTGTT 
    ATAATGGAAG GTGTTGGACT AAGAGCTGTA GGATCACACT GTTCTTTATC 
    TGAGATGGAT GATCTTGATT TGACTCGAGC TTTGGATAAA CCAAGATTGA 
    AGATCGAAAG GAAGAGATCG TTTGATGAAA GATCGATGAG TGAGCTATCG 
    ACTGGTTACA GTAGACATGA CGGTATACAC GATTCGCCGC GAGGTAGATC 
    GGTGCTTGAT ACGCCTCTTT CTTCTGCTAG AAACTCCTTT GAGCCTCATC 
    CTATGATGGC TGAAGCTTGG GAGGCTTTAA GAAGGTCAAT GGTCTTCTTC 
    CGTGGTCAAC CTGTTGGTAC TCTTGCCGCG GTTGATAATA CTACCGATGA 
    AGTCTTGAAC TATGATCAGG TGTTTGTGAG GGATTTTGTA CCGAGTGCGT 
    TGGCGTTTCT GATGAATGGA GAACCGGATA TAGTGAAGCA TTTTTTGCTT 
    AAGACACTTC AGCTGCAAGG TTGGGAGAAA CGTGTGGATC GGTTTAAGTT 
    AGGAGAAGGT GTGATGCCTG CAAGTTTCAA GGTGCTTCAT GATCCTATCC 
    GTGAAACGGA TAACATTGTT GCGGATTTCG GTGAGAGTGC TATTGGACGT 
    GTGGCTCCTG TAGATTCAGG GTTCTGGTGG ATTATTCTTC TTCGTGCTTA 
    TACCAAATCT ACTGGAGATT TGACTCTCTC TGAGACACCA GAGTGTCAAA 
    AGGGAATGAA ACTGATCTTG TCTTTGTGCT TAGCTGAAGG GTTTGACACG 
    TTTCCTACAC TGCTTTGTGC TGATGGATGT TCCATGATTG ATCGAAGAAT 
    GGGTGTTTAT GGGTATCCCA TTGAGATCCA AGCGTTGTTC TTCATGGCTT 
    TGAGATCTGC TTTGTCGATG TTAAAGCCCG ATGGAGATGG CAGAGAGGTC 
    ATTGAGAGGA TCGTTAAGCG ACTTCATGCC TTGAGCTTCC ATATGCGCAA 
    TTACTTCTGG CTTGATCATC AGAACCTCAA TGACATTTAC AGGTTCAAGA 
    CTGAGGAATA CTCTCACACG GCGGTGAACA AGTTCAATGT GATGCCTGAT 
    TCTATACCCG AGTGGGTTTT CGACTTCATG CCTCTCCGTG GAGGCTACTT 
    TGTGGGAAAC GTAGGACCTG CCCATATGGA TTTCCGGTGG TTCGCACTCG 
    GTAATTGTGT CTCCATACTT TCTTCATTGG CCACTCCAGA TCAATCCATG 
    GCCATTATGG ACCTCCTTGA GCACCGGTGG GCAGAGCTTG TAGGTGAGAT 
    GCCTCTCAAG ATTTGTTATC CATGCCTCGA GGGCCATGAG TGGCGCATCG 
    TTACTGGCTG TGACCCCAAG AACACACGGT GGAGCTACCA CAATGGTGGA 
    TCTTGGCCAG TTTTGCTGTG GCAGCTAACA GCAGCGTGCA TTAAGACAGG 
    GAGACCGCAG ATCGCAAGAC GCGCGGTTGA CCTCATAGAA TCGCGTCTTC 
    ACCGAGACTG TTGGCCAGAG TATTACGACG GTAAGCTCGG AAGGTACGTT 
    GGAAAACAGG CAAGGAAATA CCAGACTTGG TCAATCGCAG GTTACTTAGT 
    GGCGAAAATG TTGCTAGAAG ATCCTTCACA CATTGGTATG ATCTCTCTTG 
    AAGAAGACAA ACTCATGAAA CCAGTCATCA AGCGATCTGC GTCTTGGCCA 
    CAACTCTGAA AAACCGCTTT AGGTTTTTGT TCCGGTTCTA ATATTTGCCA 
    CGATATGATT TTTTGTTGTT GTTGTTTGTA TGATAATGTT ATTGAAAACT 
    TGTGCGGGGA CATAGACTTT TTATTGATTG CTTTCTTTCT TGCTTTGCAA 
    GTAAGGAAAA AGAAAATGGG AAAAGCTCGT TTGCCGTCAA AAAAAAAAAA 
    AAAA

    Gene models with high sequence identity

    1. AT1G35580.2 [+] show detail - cytosolic invertase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Six-hairpin glycosidase-like 1.8e-24
    HMMPfam Plant neutral invertase 6.7e-242

    See the detailed result >

    AT1G35580.2

    Model type
    Protein coding
    Short Description
    cytosolic invertase 1
    Curator Summary
    Encodes a protein with cytosolic (alkaline/neutral) invertase activity. The protein was shown to interact with PIP5K9.
    Computational Description
    cytosolic invertase 1 (CINV1); FUNCTIONS IN: protein binding, beta-fructofuranosidase activity; INVOLVED IN: carbohydrate metabolic process, sucrose catabolic process, using invertase or sucrose synthase, root development, cellular amino acid metabolic process; LOCATED IN: cytosol, nucleus, plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: cytosolic invertase 2 (TAIR:AT4G09510.1); Has 684 Blast hits to 681 proteins in 93 species: Archae - 0; Bacteria - 123; Metazoa - 0; Fungi - 0; Plants - 317; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR