F00845

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00845

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00845

Determination of introduced cDNA(s)

  • RAFL09-28-I04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-28-I04 - Resource: pda09708

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-28-I04 - full reading 
    AATTTCAACG TCTCGTCCTT CAATTTTCGT TTTCCGAGAA AATTTAGGAA 
    AGAAAGAGAA AGAGAGGGCA GAGACAAAAA TTTCTTCGCC GTCTGAGTGG 
    GAAAGATGGC GGAGGATTTC GCTAGAGCGG TAGACGATGG GCTTAAACTC 
    GCGAAACGGA TTTATTTCGG CAAAGACCGA GCCGTTGCGG CGCCGAGACC 
    ACCTGCTCCG ATGGACAGAT CTTCCACTAC GCAGCCTTAC CTTCCTACAG 
    CACCTATGGT TTACGCCGTT ATACCCGACC CGGGAATTGT GGATAACCCG 
    GATTTGCCTA GCTATCAGCC TCACGTGCAC GGCAGGTGCG ACCCACCGGC 
    TTTGATTCCT CTGCAGATGA ATTCGATTGA GCTGGATGTT GATTGTTATC 
    TCGACACGGC TCTTGTTACT GTCACCGGAT CGTGGCGGGT TCATTGTGTT 
    ATGGGAAGCA AGAGATGTGA TTGCCGAATT GCTATTCCCA TGGGAGAACA 
    GGGATCAATA CTAGGTGTTG AGGTTGAGAT TCCTAGAAAA TCGTACACAA 
    CGCAGTTGAT CACAGCAGAA GATGGAAACG AATTTGAGAA AACGGCACTA 
    CCTGAAACTG GTGGCTTTTT GAAACCTAAC ATTTTCACTC TTACTATACC 
    ACAGGTTGAT GGAGGTACCA ATCTCTCTAT CAAGATGACT TGGTCTCAGA 
    AGTTGACGTA TAACCAAGGG CAGTTTTTTC TTGATATTCC TTTCAACTTT 
    CCTGAGTATG TGACTCCTGC GGTAAAGAAA ATCTCAAAAA GAGAAAAGAT 
    TTACTTGAGT GTTAATGCTG GTACTGGAAC AGAAGTTCTC TGCAAAGGAT 
    GCAGTCATCA ACTAAAGGAG AAATTGCGGA GTGCAGGGAA GTTGAGGTTT 
    GCATATGAAG CAGATGTTTT GAAGTGGTCG AACACTGACT TTAGCTTTTC 
    TTATACGGCC TCCTCAAGTA ATATAGTTGG TGGACTTTTC CTTCAATCTG 
    CGCCTGTTCA CGATGTTGAT CAGAGGGACA TATTTTCTTT CTATCTTTTT 
    CCAGGAAAGC AGCAAAAAAC TAAGGCATTC AAGCGGGAGG TAGTATTTGT 
    TGTTGACATA AGTAAAAGTA TGACTGGAAA ACCTCTCGAG GATGTAAAAA 
    ATGCGATATC TACAGCTCTA TCTAAGCTTG ATCCTGGAGA TTCTTTCAAT 
    ATTATCACTT TCAGCAATGA TACTGCTCTA TTTTCGACAT CAATGGAGTC 
    AGTCACTTCT GATGCTGTTG AAAGAGGCAT TGAGTGGATG AACAAGAACT 
    TTGTCGTCGC AGATGGTACA AACATGCTCC CTCCCCTAGA GAAGGCTGTG 
    GAAATGCTTT CAAATACTCG TGGCTCTATT CCTATGATCT TCTTCGTAAC 
    AGATGGGTCT GTTGAAGATG AGAGACACAT TTGTGATGTA ATGAAGAAAC 
    ATCTAGCTAG TGCTGGATCA GTGTTTCCTC GGATACACAC TTTTGGGTTA 
    GGTGTATTCT GTAATCACTA CTTCCTGCAA ATGCTTGCAA ATATATCCTG 
    TGGCCAGCAC GAATCAGTTT ATAATACAGA TCACATTGAG GAAAGAATGG 
    ACAAACTGTT TACAAAGGCT TTATCCACCA TTCTTGTTAA TATAGCAATT 
    GAGCCCCTTC AGAGTCTAGA TGAAGTTGAG GTATACCCTT CAAATATTCC 
    GGATCTGACG TCTGCAAGTC CATTGATGAT ATATGGAAGA TACCGAGGAA 
    AGTTCCCCGA GAATGTGATA GCCAAAGGTC TGCTAGGAGA TTTGAGCAGC 
    TTTTCGACAG ACTTGACTGT ACAGAGTGCA AAAGACATGC CTCTTGATAA 
    AGTATTTGCA AAGAATGTTA TTGACTTGCT TACTGCTGAG GCATGGTTTT 
    CTGAAGATAA ACAGCTAAAA GAGAAGATTG CTAAACTAAG CATCCAAACC 
    GGCGTACTAT CCGAGTATAC TCGAATGATC CAATTAGAGA ACACAGAAGA 
    ATTGAAACCC AGCGAAACTG GCGGAAAGAA AAAGACAACA AGCAACGGCG 
    AGAAACAGAA GATGATATCA AGAACGATCC CGCTACAAAG CCTTGGGATA 
    GGATTTGGGG ATAAAACAGC CACCAGAGAG AATGTTCCGC CAGGATTTGG 
    CGAGCAGAAA GCTCCTGATG CTGCTGAGAA GTTCGTCAAG GCTGCTTCGA 
    GCTGTTGTGT CTCCTTGTGC AACAAATGTT GCTGCATGTG TTGTGTCCAA 
    TGCTGCTCTA AGCTCAATGA TCAATGTGTC CTTGTCTTCA CACAGCTCTT 
    CACAGCGATT GCTTGCATCG CCTGCTTTGA ATGTTGCTCA ACTGTTTGCT 
    GTTCTGGAGA CGATGGGTAG TTAGTTAAAT TATAAAAAAA AATCGGTTTT 
    GAATTCGAGT GTAAAGCTTT AAAAGTTTCA AAGTAAGTTT GTACATTTTA 
    CATACACACT GCATGTAATT TCTGTACGGC CTGATCAAAT ATAAAAGCTG 
    TGGGTTTTCT GT

    Gene models with high sequence identity

    1. AT1G19110.1 [+] show detail - inter-alpha-trypsin inhibitor heavy chain-related
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN 4.8e-177
    HMMPanther VON WILLEBRAND FACTOR, TYPE A DOMAIN CONTAINI 4.8e-177
    superfamily vWA-like 8.5e-23
    HMMSmart von Willebrand factor, type A 2e-11
    HMMPfam von Willebrand factor, type A 2.1e-19
    ProfileScan von Willebrand factor, type A 14.796

    See the detailed result >

    AT1G19110.1

    Model type
    Protein coding
    Short Description
    inter-alpha-trypsin inhibitor heavy chain-related
    Computational Description
    inter-alpha-trypsin inhibitor heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72500.1); Has 1620 Blast hits to 1609 proteins in 312 species: Archae - 28; Bacteria - 510; Metazoa - 544; Fungi - 65; Plants - 218; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR