F00845

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00845

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00845

Determination of introduced cDNA(s)

  • RAFL09-28-I04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-28-I04 - Resource: pda09708

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-28-I04 - full reading
    AATTTCAACG TCTCGTCCTT CAATTTTCGT TTTCCGAGAA AATTTAGGAA 
    AGAAAGAGAA AGAGAGGGCA GAGACAAAAA TTTCTTCGCC GTCTGAGTGG
    GAAAGATGGC GGAGGATTTC GCTAGAGCGG TAGACGATGG GCTTAAACTC
    GCGAAACGGA TTTATTTCGG CAAAGACCGA GCCGTTGCGG CGCCGAGACC
    ACCTGCTCCG ATGGACAGAT CTTCCACTAC GCAGCCTTAC CTTCCTACAG
    CACCTATGGT TTACGCCGTT ATACCCGACC CGGGAATTGT GGATAACCCG
    GATTTGCCTA GCTATCAGCC TCACGTGCAC GGCAGGTGCG ACCCACCGGC
    TTTGATTCCT CTGCAGATGA ATTCGATTGA GCTGGATGTT GATTGTTATC
    TCGACACGGC TCTTGTTACT GTCACCGGAT CGTGGCGGGT TCATTGTGTT
    ATGGGAAGCA AGAGATGTGA TTGCCGAATT GCTATTCCCA TGGGAGAACA
    GGGATCAATA CTAGGTGTTG AGGTTGAGAT TCCTAGAAAA TCGTACACAA
    CGCAGTTGAT CACAGCAGAA GATGGAAACG AATTTGAGAA AACGGCACTA
    CCTGAAACTG GTGGCTTTTT GAAACCTAAC ATTTTCACTC TTACTATACC
    ACAGGTTGAT GGAGGTACCA ATCTCTCTAT CAAGATGACT TGGTCTCAGA
    AGTTGACGTA TAACCAAGGG CAGTTTTTTC TTGATATTCC TTTCAACTTT
    CCTGAGTATG TGACTCCTGC GGTAAAGAAA ATCTCAAAAA GAGAAAAGAT
    TTACTTGAGT GTTAATGCTG GTACTGGAAC AGAAGTTCTC TGCAAAGGAT
    GCAGTCATCA ACTAAAGGAG AAATTGCGGA GTGCAGGGAA GTTGAGGTTT
    GCATATGAAG CAGATGTTTT GAAGTGGTCG AACACTGACT TTAGCTTTTC
    TTATACGGCC TCCTCAAGTA ATATAGTTGG TGGACTTTTC CTTCAATCTG
    CGCCTGTTCA CGATGTTGAT CAGAGGGACA TATTTTCTTT CTATCTTTTT
    CCAGGAAAGC AGCAAAAAAC TAAGGCATTC AAGCGGGAGG TAGTATTTGT
    TGTTGACATA AGTAAAAGTA TGACTGGAAA ACCTCTCGAG GATGTAAAAA
    ATGCGATATC TACAGCTCTA TCTAAGCTTG ATCCTGGAGA TTCTTTCAAT
    ATTATCACTT TCAGCAATGA TACTGCTCTA TTTTCGACAT CAATGGAGTC
    AGTCACTTCT GATGCTGTTG AAAGAGGCAT TGAGTGGATG AACAAGAACT
    TTGTCGTCGC AGATGGTACA AACATGCTCC CTCCCCTAGA GAAGGCTGTG
    GAAATGCTTT CAAATACTCG TGGCTCTATT CCTATGATCT TCTTCGTAAC
    AGATGGGTCT GTTGAAGATG AGAGACACAT TTGTGATGTA ATGAAGAAAC
    ATCTAGCTAG TGCTGGATCA GTGTTTCCTC GGATACACAC TTTTGGGTTA
    GGTGTATTCT GTAATCACTA CTTCCTGCAA ATGCTTGCAA ATATATCCTG
    TGGCCAGCAC GAATCAGTTT ATAATACAGA TCACATTGAG GAAAGAATGG
    ACAAACTGTT TACAAAGGCT TTATCCACCA TTCTTGTTAA TATAGCAATT
    GAGCCCCTTC AGAGTCTAGA TGAAGTTGAG GTATACCCTT CAAATATTCC
    GGATCTGACG TCTGCAAGTC CATTGATGAT ATATGGAAGA TACCGAGGAA
    AGTTCCCCGA GAATGTGATA GCCAAAGGTC TGCTAGGAGA TTTGAGCAGC
    TTTTCGACAG ACTTGACTGT ACAGAGTGCA AAAGACATGC CTCTTGATAA
    AGTATTTGCA AAGAATGTTA TTGACTTGCT TACTGCTGAG GCATGGTTTT
    CTGAAGATAA ACAGCTAAAA GAGAAGATTG CTAAACTAAG CATCCAAACC
    GGCGTACTAT CCGAGTATAC TCGAATGATC CAATTAGAGA ACACAGAAGA
    ATTGAAACCC AGCGAAACTG GCGGAAAGAA AAAGACAACA AGCAACGGCG
    AGAAACAGAA GATGATATCA AGAACGATCC CGCTACAAAG CCTTGGGATA
    GGATTTGGGG ATAAAACAGC CACCAGAGAG AATGTTCCGC CAGGATTTGG
    CGAGCAGAAA GCTCCTGATG CTGCTGAGAA GTTCGTCAAG GCTGCTTCGA
    GCTGTTGTGT CTCCTTGTGC AACAAATGTT GCTGCATGTG TTGTGTCCAA
    TGCTGCTCTA AGCTCAATGA TCAATGTGTC CTTGTCTTCA CACAGCTCTT
    CACAGCGATT GCTTGCATCG CCTGCTTTGA ATGTTGCTCA ACTGTTTGCT
    GTTCTGGAGA CGATGGGTAG TTAGTTAAAT TATAAAAAAA AATCGGTTTT
    GAATTCGAGT GTAAAGCTTT AAAAGTTTCA AAGTAAGTTT GTACATTTTA
    CATACACACT GCATGTAATT TCTGTACGGC CTGATCAAAT ATAAAAGCTG
    TGGGTTTTCT GT

    Gene models with high sequence identity

    1. AT1G19110.1 [+] show detail - inter-alpha-trypsin inhibitor heavy chain-related
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN 4.8e-177
    HMMPanther VON WILLEBRAND FACTOR, TYPE A DOMAIN CONTAINI 4.8e-177
    superfamily vWA-like 8.5e-23
    HMMSmart von Willebrand factor, type A 2e-11
    HMMPfam von Willebrand factor, type A 2.1e-19
    ProfileScan von Willebrand factor, type A 14.796

    See the detailed result >

    AT1G19110.1

    Model type
    Protein coding
    Short Description
    inter-alpha-trypsin inhibitor heavy chain-related
    Computational Description
    inter-alpha-trypsin inhibitor heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72500.1); Has 1620 Blast hits to 1609 proteins in 312 species: Archae - 28; Bacteria - 510; Metazoa - 544; Fungi - 65; Plants - 218; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR