F00901

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00901

Determination of introduced cDNA(s)

RAFL09-97-L12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-97-L12 - Resource: pda09139

full reading [+] show sequence

ATCGATTGAG CTTTCTACTT GAAAACCATC TTTTCCGATC TATCGAATCG 
GAGCGGCGAA GGAAGGAGAA TGGGTGTCCG TACAATATCT CAGGAGGCAT 
TCGACGATCT GGTTAGGGAA AATGTTGAAG ATCTTGGTAT GGATCCCTCC 
GAAGCTCTCG AAGACGCTCT CTACACTCTC AAGCTCCAAG GCGTCGATCT 
CTTTGGGATC ATTACATGTG TTCCTGGAGA AAGTAGCGTT AAGGACAATC 
CGGTGATTGC TTGTTTAGAT AGACTAAAAG AATTCGACAG TGTTTCAATA 
GACGGACCTC TTCGAGATGA GGTTTTCGAT GAGATATCGA GTTTGTTCAA 
GAATCTCAAT GAGCTTTGTA GCAGCCAAGA ATCAGGGAAC GCTGCAATTG 
CGACAAAACA TGGTGCTGTG GATTTAACTT GCTCGATTTG TTCCAAAATC 
AAGATATCTA CTAGAAGTAA TCGTGTTCTT GTTCCTTGCT TTAAGGCTTT 
GGCTGTGTTG ATCCGTGACA TTCAGAGCAC AGAGAGATTC AGGAATTGTA 
CTGGACCAAA TATCGTTGTT GATCTCTTAA ATGATTCCAG CTCCGATTCT 
GATTTGTTAG ATGCTGGTTT TGCGGTTGTT GCTGCTGCAG CAACTGGTAA 
TGAAGTTGTG AAACAGTTAT TCATGGAACT GAAAATCGAT GAACTTATTC 
TGCAAGTGTT GAATAGAGAG AGTAAAACTA CCATTAGAGC TCTGTACGAT 
GCTATTTGTG CTCTTTTGAC TCCAGATGAC TTCCGTGTTG TTGCTTCCCA 
AGTTTATGGT TATGCACGAA CTTTTGCCAA ATTAGGGATT GCGACAGCCC 
TCACTGAAGC ATTACAGGCA GGGATTGGCT CTGATAGTTT GGTGTCAGCA 
AGTACTGCGT TAAAAGCAAT TGCTGTCAAT GATGAAATAT GTAAATCTAT 
TGCTGAATCC GGTGGAATAG ATACACTTCT TCGGTGTATT GATGATAGCG 
GTGAGCAAGG CAACAAAACT GCTGCTAAGA CATGTTGTTC CCTGTTGTCT 
AAGTTGGCAG GAAGTGACTC TAACAAGAGT ACCATAGTTG AGAAGCAAGG 
TCTGGACAAG CTAATCACAC TCGCACTACG ATTCTCTGAT GATCCTCTAG 
TCATACAAGA GGTGATGTTG ATAATCTCTA TAATCTGTCT GAGATCACCA 
GACCACGCAG CCAAGGCTAT AGAAGCTGGA GCTGGTGATC TAGCGGTCCA 
AGCAATGAAG AGGTTCCCAG TAGCTGCTCA AATGCAGAGA AACGCTTGCA 
ACATGATACG GAACATTGCT GTCAGAAGTG CAGAGAACAG AACTATTCTG 
CTTGCTAATG GAATCGAGAA GCTGATAAGA ACTGCTAAAG CCAACAATGA 
GACATGCAGA GCCGCTGCAA CTGATGCACT GAGAGACCTT GGCCTTGATA 
ACTACAATAA CTAAGGTCAA TCTTTCTCCA TTGGTTGGTA CTCGCAACAA 
CCGGAATGAA TCCAGTTTTT TTTTTCAAAA ATTTCATAAA CAGTTTGCAT 
TGAGTTCTCT CTTTTGGGTA GAAGGCATTC CGATCTAGTC TTTTTTGCAA 
CGATTGCTTT TGTTCGAATG CTTGAACATG TAGTAAAATT GAAAGGAATT 
GATTGAAAAT TTCGGT

Gene models with high sequence identity

AT4G33945.1 [+] show detail - ARM repeat superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Armadillo	0.16
HMMSmart	Armadillo	74
HMMSmart	Armadillo	22
HMMSmart	Armadillo	31
superfamily	Armadillo-type fold	2e-34
Gene3D	Armadillo-like helical	5.3e-19
HMMPanther	gb def: Deoxyribonuclease II precursor (EC 3.	0.00039
HMMPanther	Deoxyribonuclease II	0.00039
HMMPanther	UNCHARACTERIZED	1.1e-85

See the detailed result >

AT4G33945.1

Model type: Protein coding
Short Description: ARM repeat superfamily protein
Computational Description: ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR