F00901

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00901

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00901

Determination of introduced cDNA(s)

  • RAFL09-97-L12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-97-L12 - Resource: pda09139

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-97-L12 - full reading
    ATCGATTGAG CTTTCTACTT GAAAACCATC TTTTCCGATC TATCGAATCG 
    GAGCGGCGAA GGAAGGAGAA TGGGTGTCCG TACAATATCT CAGGAGGCAT
    TCGACGATCT GGTTAGGGAA AATGTTGAAG ATCTTGGTAT GGATCCCTCC
    GAAGCTCTCG AAGACGCTCT CTACACTCTC AAGCTCCAAG GCGTCGATCT
    CTTTGGGATC ATTACATGTG TTCCTGGAGA AAGTAGCGTT AAGGACAATC
    CGGTGATTGC TTGTTTAGAT AGACTAAAAG AATTCGACAG TGTTTCAATA
    GACGGACCTC TTCGAGATGA GGTTTTCGAT GAGATATCGA GTTTGTTCAA
    GAATCTCAAT GAGCTTTGTA GCAGCCAAGA ATCAGGGAAC GCTGCAATTG
    CGACAAAACA TGGTGCTGTG GATTTAACTT GCTCGATTTG TTCCAAAATC
    AAGATATCTA CTAGAAGTAA TCGTGTTCTT GTTCCTTGCT TTAAGGCTTT
    GGCTGTGTTG ATCCGTGACA TTCAGAGCAC AGAGAGATTC AGGAATTGTA
    CTGGACCAAA TATCGTTGTT GATCTCTTAA ATGATTCCAG CTCCGATTCT
    GATTTGTTAG ATGCTGGTTT TGCGGTTGTT GCTGCTGCAG CAACTGGTAA
    TGAAGTTGTG AAACAGTTAT TCATGGAACT GAAAATCGAT GAACTTATTC
    TGCAAGTGTT GAATAGAGAG AGTAAAACTA CCATTAGAGC TCTGTACGAT
    GCTATTTGTG CTCTTTTGAC TCCAGATGAC TTCCGTGTTG TTGCTTCCCA
    AGTTTATGGT TATGCACGAA CTTTTGCCAA ATTAGGGATT GCGACAGCCC
    TCACTGAAGC ATTACAGGCA GGGATTGGCT CTGATAGTTT GGTGTCAGCA
    AGTACTGCGT TAAAAGCAAT TGCTGTCAAT GATGAAATAT GTAAATCTAT
    TGCTGAATCC GGTGGAATAG ATACACTTCT TCGGTGTATT GATGATAGCG
    GTGAGCAAGG CAACAAAACT GCTGCTAAGA CATGTTGTTC CCTGTTGTCT
    AAGTTGGCAG GAAGTGACTC TAACAAGAGT ACCATAGTTG AGAAGCAAGG
    TCTGGACAAG CTAATCACAC TCGCACTACG ATTCTCTGAT GATCCTCTAG
    TCATACAAGA GGTGATGTTG ATAATCTCTA TAATCTGTCT GAGATCACCA
    GACCACGCAG CCAAGGCTAT AGAAGCTGGA GCTGGTGATC TAGCGGTCCA
    AGCAATGAAG AGGTTCCCAG TAGCTGCTCA AATGCAGAGA AACGCTTGCA
    ACATGATACG GAACATTGCT GTCAGAAGTG CAGAGAACAG AACTATTCTG
    CTTGCTAATG GAATCGAGAA GCTGATAAGA ACTGCTAAAG CCAACAATGA
    GACATGCAGA GCCGCTGCAA CTGATGCACT GAGAGACCTT GGCCTTGATA
    ACTACAATAA CTAAGGTCAA TCTTTCTCCA TTGGTTGGTA CTCGCAACAA
    CCGGAATGAA TCCAGTTTTT TTTTTCAAAA ATTTCATAAA CAGTTTGCAT
    TGAGTTCTCT CTTTTGGGTA GAAGGCATTC CGATCTAGTC TTTTTTGCAA
    CGATTGCTTT TGTTCGAATG CTTGAACATG TAGTAAAATT GAAAGGAATT
    GATTGAAAAT TTCGGT

    Gene models with high sequence identity

    1. AT4G33945.1 [+] show detail - ARM repeat superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Armadillo 0.16
    HMMSmart Armadillo 74
    HMMSmart Armadillo 22
    HMMSmart Armadillo 31
    superfamily Armadillo-type fold 2e-34
    Gene3D Armadillo-like helical 5.3e-19
    HMMPanther gb def: Deoxyribonuclease II precursor (EC 3. 0.00039
    HMMPanther Deoxyribonuclease II 0.00039
    HMMPanther UNCHARACTERIZED 1.1e-85

    See the detailed result >

    AT4G33945.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR