F00932

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00932

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00932

Determination of introduced cDNA(s)

  • RAFL14-04-L12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-04-L12 - Resource: pda18085

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-04-L12 - full reading 
    CTTCTAGTCT TCTTCTTCGA ACTCTTTTTT TAAGACCAAA AAAAAACACA 
    CACAAAGAGA TGTCTTTTGT CTGACTCCAT AATCACACCA TCACCAAGAA 
    GAAGAAGATC TAGGTTTTGC ATCTCTCGTC ATTACAATGG AGCGAGCACG 
    AACCGAAAGC CCTAGCTACT TCCGTCAATG GAGCGGCGAT TCAGGTACCA 
    CCAATGCCGC CGCCGTAGCT CCTTCTTCTC CGGCGCGTCA TCACCACGCT 
    CGATCTTCTT CCGTCACTAA TATGTCTAAC GTCAAACGAG CTCAAAACGT 
    TGCTGCTAAA GCCGCTGCTC AGAGACTTGC TAAAGTCATG GCTTCTCAGA 
    CCAACAATGA TGACGACGAT GACGATGATG ATGATGAAGT CGGTGGTGAT 
    GATTTAGGTT TCCGATATGG TGCTCCTCCT CCTCTTTCCT TCACTAGAAA 
    TCCTTCTTCC ACAATTGCTA AACCTAAACC TGTTGCTTCT TCTGCTGTTG 
    TTCCTCCTCC TAAGATCTCT AGATCTTCCT CCCCTGCGAA CTCTCCAGCT 
    GTGTCTGTTC GGGCATCGCA ACCGCCTGTT CCACCGAGTA AACTGAGGAA 
    TCAAACTACC AATCCTTTAC CAGTTGCAAC TCCTAAGACT GAAAAGAGGG 
    TTTTAGCTGA TATTGGTCAT TTTAATGGAA AAGATTCGAA AGATCAGCAT 
    GAAGCATCTG CACTTCGTGA CGAACTTGAT ATGCTGCAAG AGGAGAATGA 
    TAGTATACTT GAAAAGCTTA GGCTTGAGGA TGAGAAATGC AAGGAAGCAG 
    AAGCTAGGGT GAGAGAGCTT GAAAAACAGG TAACTTCTCT GGGAGAAGGT 
    GTATCATTGG AAGCTAAACT TCTGAGCCGA AAAGAAGCAG CTTTGCGTCA 
    AAGAGAGGCG GCCCTCAAAG ATGCAAGGCA GAATAGAGAT GGGACTAATA 
    GAGAGACTAC TGCTCTTCGG TCTCAAGTAG AGACTGCAAA ACTGGAGACC 
    GCTGCTATAG TAGCACAACT TCAAGGAGCA GAATCTGAAG TCAATGGTCT 
    ACGGACAATG ACGCATAGAA TGATATTGAC CCAAAAGGAG ATGGAGGAAG 
    TTGTTCTTAA GCGGTGCTGG CTAGCTCGGT ATTGGGGTCT AGCTTCCAGA 
    TATGGAATAT GTTCGGATAT AGCTACGTCC AAGTACGAAT ACTGGTCATC 
    TCTGGCTCCT CTTCCTTTTG AAATTGTGCT GTCAGCTGGA CAGAAGGCTA 
    AAGAAGAAAG TTGGGAAAAA GAATCTGAGG AGAACGAGAA GAGGAGCCAG 
    CTCGTTCAAG ATATAAATGA TCTAACAGGA GAAGGAAATA TTGAAAGTAT 
    GCTCTCTGTG GAAATGGGTC TAAAGGAGCT AACTTCTTTA AAGGTTGAAG 
    TTGCCATTAC TATTACATTA GCCCAGCTAA GGTTGGCCAA TACTACTCGA 
    CTGTCTGATA TCGAGTTAAA ATCACCAGGT GGTCCTAAGA TTACGGAGAC 
    ACTTGAATTG AGTCAAGAAG AGTCTGAGGA TGTTCTCTTC AAGGAGGCTT 
    GGCTCACGTA CTTCTGGAGA AGAGCACAAT CCCTTGGCAT AGAAGTGGAC 
    ACTGCGAGAG AACGTCTTAG ATTTTGGATC AGCAGGAGCG CACATTCTCC 
    ATCTTCACAT GACGCCATGG AAGTTGAGCA AGGACTAACA GAGCTAAGAA 
    AGCTGCGGAT AGAACGTAGA TTGTGGGAAG CCTCCAGGTC CAGCCAGTAA 
    GTAGTGACCT TGGGGACCTC GGGATCCCAG AACAGTCTTG CTACCACAGC 
    TTTAACAGTA CTGTATATCG TACATGCTTT CTTCTCGTGT GGTTGGGGTA 
    CTTTGCAGTC AGAAAAATGT TTCCAGTTTT GTAAACCGAA GAATTGTATT 
    ACACGCACTA CTTTTGACAT ATAATATATC CACGTTTTCA CGTCCTAACC 
    AAAAAA

    Gene models with high sequence identity

    1. AT5G13260.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); ...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT5G13260.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR