F00932

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00932

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00932

Determination of introduced cDNA(s)

  • RAFL14-04-L12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-04-L12 - Resource: pda18085

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-04-L12 - full reading
    CTTCTAGTCT TCTTCTTCGA ACTCTTTTTT TAAGACCAAA AAAAAACACA 
    CACAAAGAGA TGTCTTTTGT CTGACTCCAT AATCACACCA TCACCAAGAA
    GAAGAAGATC TAGGTTTTGC ATCTCTCGTC ATTACAATGG AGCGAGCACG
    AACCGAAAGC CCTAGCTACT TCCGTCAATG GAGCGGCGAT TCAGGTACCA
    CCAATGCCGC CGCCGTAGCT CCTTCTTCTC CGGCGCGTCA TCACCACGCT
    CGATCTTCTT CCGTCACTAA TATGTCTAAC GTCAAACGAG CTCAAAACGT
    TGCTGCTAAA GCCGCTGCTC AGAGACTTGC TAAAGTCATG GCTTCTCAGA
    CCAACAATGA TGACGACGAT GACGATGATG ATGATGAAGT CGGTGGTGAT
    GATTTAGGTT TCCGATATGG TGCTCCTCCT CCTCTTTCCT TCACTAGAAA
    TCCTTCTTCC ACAATTGCTA AACCTAAACC TGTTGCTTCT TCTGCTGTTG
    TTCCTCCTCC TAAGATCTCT AGATCTTCCT CCCCTGCGAA CTCTCCAGCT
    GTGTCTGTTC GGGCATCGCA ACCGCCTGTT CCACCGAGTA AACTGAGGAA
    TCAAACTACC AATCCTTTAC CAGTTGCAAC TCCTAAGACT GAAAAGAGGG
    TTTTAGCTGA TATTGGTCAT TTTAATGGAA AAGATTCGAA AGATCAGCAT
    GAAGCATCTG CACTTCGTGA CGAACTTGAT ATGCTGCAAG AGGAGAATGA
    TAGTATACTT GAAAAGCTTA GGCTTGAGGA TGAGAAATGC AAGGAAGCAG
    AAGCTAGGGT GAGAGAGCTT GAAAAACAGG TAACTTCTCT GGGAGAAGGT
    GTATCATTGG AAGCTAAACT TCTGAGCCGA AAAGAAGCAG CTTTGCGTCA
    AAGAGAGGCG GCCCTCAAAG ATGCAAGGCA GAATAGAGAT GGGACTAATA
    GAGAGACTAC TGCTCTTCGG TCTCAAGTAG AGACTGCAAA ACTGGAGACC
    GCTGCTATAG TAGCACAACT TCAAGGAGCA GAATCTGAAG TCAATGGTCT
    ACGGACAATG ACGCATAGAA TGATATTGAC CCAAAAGGAG ATGGAGGAAG
    TTGTTCTTAA GCGGTGCTGG CTAGCTCGGT ATTGGGGTCT AGCTTCCAGA
    TATGGAATAT GTTCGGATAT AGCTACGTCC AAGTACGAAT ACTGGTCATC
    TCTGGCTCCT CTTCCTTTTG AAATTGTGCT GTCAGCTGGA CAGAAGGCTA
    AAGAAGAAAG TTGGGAAAAA GAATCTGAGG AGAACGAGAA GAGGAGCCAG
    CTCGTTCAAG ATATAAATGA TCTAACAGGA GAAGGAAATA TTGAAAGTAT
    GCTCTCTGTG GAAATGGGTC TAAAGGAGCT AACTTCTTTA AAGGTTGAAG
    TTGCCATTAC TATTACATTA GCCCAGCTAA GGTTGGCCAA TACTACTCGA
    CTGTCTGATA TCGAGTTAAA ATCACCAGGT GGTCCTAAGA TTACGGAGAC
    ACTTGAATTG AGTCAAGAAG AGTCTGAGGA TGTTCTCTTC AAGGAGGCTT
    GGCTCACGTA CTTCTGGAGA AGAGCACAAT CCCTTGGCAT AGAAGTGGAC
    ACTGCGAGAG AACGTCTTAG ATTTTGGATC AGCAGGAGCG CACATTCTCC
    ATCTTCACAT GACGCCATGG AAGTTGAGCA AGGACTAACA GAGCTAAGAA
    AGCTGCGGAT AGAACGTAGA TTGTGGGAAG CCTCCAGGTC CAGCCAGTAA
    GTAGTGACCT TGGGGACCTC GGGATCCCAG AACAGTCTTG CTACCACAGC
    TTTAACAGTA CTGTATATCG TACATGCTTT CTTCTCGTGT GGTTGGGGTA
    CTTTGCAGTC AGAAAAATGT TTCCAGTTTT GTAAACCGAA GAATTGTATT
    ACACGCACTA CTTTTGACAT ATAATATATC CACGTTTTCA CGTCCTAACC
    AAAAAA

    Gene models with high sequence identity

    1. AT5G13260.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); ...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT5G13260.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR