F01001

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01001

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01001

Determination of introduced cDNA(s)

  • RAFL05-19-L04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-19-L04 - Resource: pda02787

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-19-L04 - full reading 
    AGAGAAGAGA GCTGTGTTGG TTTTTGAGGT AAAAGAAGAG ACCCAATTTC 
    GATTTGGAGG ATAGAGACGA AGAAGAAGAC AGCTCCGATG GCTGATCCTG 
    AACTAGAAGC TATTAGACAG AGGAGAATGC AAGAGCTCAT GGCTCGACAA 
    GGCATGGGTA AGCAGGGCAA TCAGCAGAAT CCAGAGCAAG AGAAACAGCA 
    GGAAGATGCT AAAAGGGAAG CTGATGAACG TAGGCAAATG ATGCTTAGTC 
    AAGTATTGTC TTCTCAAGCC CGAGAGAGAA TTGCTCGAAT TGCTCTGGTG 
    AAACCTGAGA AAGCTAGAGG TGTGGAGGAT GTTATTTTGA GGGCTGCTCA 
    GATGGGACAG ATAGTTGAGA AGGTTTCTGA GGAACGGCTT ATAACACTGT 
    TGGAACAAAT AAACAGCCAA ACTACCAAGC AAACGAAAGT CACGTACCAA 
    CGGCGCCGTG GGGTGGACGA CGATTAGGAA GGAAGAAGAA TATTATGATG 
    TGCTTTGTAT ATCTATGGAG ATCTCACTGT TATGTTAGTG AGTTCACTTA 
    AGATCTACTT AAATGTTTCT GTTCAATATG TTTATTGTGA GTGAATCTTG 
    ATTATCTTCC AAGCACTTGG GATGAGATTA AAGCAATCTG AAACTGAAGC 
    TCTACATTTT TACTAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT1G29850.1 [+] show detail - double-stranded DNA-binding family protein
      E-value: 0; Score: 99.85

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam DNA-binding TFAR19-related protein 4.3e-30
    HMMPIR DNA-binding TFAR19-related protein 2.1e-58
    Gene3D DNA-binding TFAR19-related protein 5.5e-20
    HMMPanther DNA-binding TFAR19-related protein 6.4e-49
    superfamily DNA-binding TFAR19-related protein 1.1e-21

    See the detailed result >

    AT1G29850.1

    Model type
    Protein coding
    Short Description
    double-stranded DNA-binding family protein
    Computational Description
    double-stranded DNA-binding family protein; FUNCTIONS IN: double-stranded DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding TFAR19-related protein (InterPro:IPR002836); Has 689 Blast hits to 689 proteins in 324 species: Archae - 253; Bacteria - 2; Metazoa - 140; Fungi - 128; Plants - 54; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR