F01021

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01021

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01021

Determination of introduced cDNA(s)

  • RAFL06-13-A09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-13-A09 - Resource: pda07558

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-13-A09 - full reading 
    AATAATATCT AAACCAAAAG CCAAAACACA CAAAAACAGA GCCATGTTCT 
    TCAAGCTCTT TACCATCTTC TTCTTCTTCA TCATCCTACT CTCTAAACCC 
    CTAAACTCCT CTTCTCAAAG TCTCAACTTC ACTTACAATA GCTTCCATCG 
    TCCACCAACT AACATATCCA TCCAAGGAAT TGCCACAGTC ACATCCAACG 
    GTATCTTGAA GCTAACAGAC AAAACGGTTA TAAGTACAGG TCACGCTTTC 
    TACACCGAAC CAATCCGGTT TAAAGATTCA CCAAACGATA CTGTCTCGTC 
    CTTCTCAACA ACCTTCGTCA TCGGTATCTA CTCTGGGATC CCGACAATTA 
    GCGGCCATGG CATGGCCTTT TTCATCGCTC CTAACCCCGT CCTCTCATCA 
    GCCATGGCTA GCCAATACCT TGGTCTCTTC AGCAGCACCA ACAACGGTAA 
    CGATACGAAT CATATACTCG CTGTCGAATT TGATACGATC ATGAACCCTG 
    AGTTTGATGA TACGAACGAT AACCATGTGG GAATCAATAT AAATAGTTTG 
    ACCTCGGTTA AAAGCTCGCT GGTTGGGTAT TGGGATGAGA TCAATCAGTT 
    TAATAATCTG ACTTTGATAA GTCGTAAACG GATGCAAGTT TGGGTTGACT 
    ATGATGATCG TACTAATCAA ATCGATGTAA CTATGGCTCC GTTTGGTGAG 
    GTTAAACCTA GGAAAGCGCT TGTTTCTGTT GTTAGAGATC TATCTTCTGT 
    TTTCTTGCAA GACATGTACT TAGGTTTCTC GGCTGCGACT GGTTATGTTC 
    TGTCAGAACA TTTTGTTTTT GGGTGGAGTT TCATGGTGAA AGGGAAGACA 
    GCTCCGCCGT TGACTTTATC GAAAGTTCCG AAGTTTCCGA GGGTCGGGCC 
    AACGAGTTTA CAGAGGTTTT ATAAGAACAG GATGCCGTTA TTTTCCCTCT 
    TGTTGATTCC GGTCTTGTTT GTTGTCTCGC TCATCTTCCT CGTGCGCTTT 
    ATCGTGAGGA GGAGGAGAAA GTTCGCGGAG GAGTTCGAAG ATTGGGAAAC 
    AGAGTTTGGG AAGAACCGGT TAAGGTTTAA GGACTTGTAC TATGCTACAA 
    AAGGGTTCAA GGATAAGGAC CTTCTTGGAT CGGGTGGGTT TGGTAGGGTT 
    TATAGAGGTG TCATGCCGAC AACGAAGAAA GAGATCGCGG TGAAGAGAGT 
    GTCGAATGAA TCTCGACAAG GGTTGAAAGA GTTTGTTGCT GAGATTGTGA 
    GTATTGGTAG GATGAGTCAT CGGAACTTAG TTCCTCTCTT GGGTTATTGT 
    CGTCGTAGAG ACGAGCTTCT TTTGGTGTAT GATTACATGC CTAATGGTAG 
    CTTAGACAAG TATTTGTACG ATTGTCCTGA GGTAACACTT GATTGGAAAC 
    AGAGGTTTAA TGTAATTATA GGTGTGGCCT CTGGCTTATT CTATCTCCAC 
    GAGGAATGGG AACAAGTGGT GATTCACCGC GACATCAAAG CCAGCAACGT 
    TTTGTTAGAC GCGGAGTACA ACGGAAGACT CGGGGATTTT GGTTTAGCTC 
    GGTTGTGCGA TCACGGTTCG GATCCTCAAA CTACGCGTGT TGTTGGAACT 
    TGGGGATACC TAGCCCCGGA TCATGTCAGA ACAGGACGGG CCACAACCGC 
    TACTGATGTT TTTGCGTTTG GGGTGCTCCT ACTAGAAGTG GCTTGCGGTA 
    GGCGACCTAT AGAGATTGAG ATCGAGAGTG ATGAGAGCGT GTTGCTAGTG 
    GATTCGGTTT TTGGTTTTTG GATAGAGGGA AACATCTTGG ATGCTACGGA 
    TCCGAATCTA GGATCGGTCT ATGACCAAAG AGAAGTCGAA ACGGTATTGA 
    AGCTAGGGTT GTTATGCTCT CACTCCGACC CACAAGTTAG ACCAACAATG 
    AGACAAGTGC TACAGTATCT AAGGGGAGAT GCAACGTTAC CAGATTTGTC 
    GCCGTTGGAC TTCCGTGGGA GTGGGAAAAT GTTGGGAATG AACCACAGAT 
    TTAGTGAGTC ATGCACATTT TCCAGTGGAT CTTCGATTGC TTATTCTATA 
    GTCTCTGGCG GGAGGTGATT TTGGAATATT AGAACATGTA TATGTCTTAC 
    ATAGTTACAT TACATATGTA GAAAGAATGT TTTTGCACAT GATAGAGACC 
    ATGTTGATAT ATATCATTGA AACTTTATC

    Gene models with high sequence identity

    1. AT4G02410.1 [+] show detail - Concanavalin A-like lectin protein kinase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 4.3e-79
    superfamily Concanavalin A-like lectin/glucanase 1.4e-78
    ProfileScan Protein kinase, catalytic domain 37.63
    HMMPfam Legume lectin, beta chain 1.4e-78
    HMMPfam Serine/threonine-protein kinase-like domain 6.1e-47
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    PatternScan Legume lectin, beta chain, Mn/Ca-binding site 0
    HMMSmart Serine/threonine-protein kinase domain 2.5e-34
    HMMSmart Tyrosine-protein kinase, catalytic domain 7.9e-29
    Gene3D Concanavalin A-like lectin/glucanase, subgroup 1e-73
    Gene3D no description 3.7e-23
    Gene3D no description 1.4e-48
    HMMPanther SERINE/THREONINE-SPECIFIC KINASE LIKE PROTEIN 3.1e-260
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.1e-260

    See the detailed result >

    AT4G02410.1

    Model type
    Protein coding
    Short Description
    Concanavalin A-like lectin protein kinase family protein
    Computational Description
    Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Legume lectin, beta chain, Mn/Ca-binding site (InterPro:IPR019825); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT4G02420.1); Has 115275 Blast hits to 113889 proteins in 4562 species: Archae - 89; Bacteria - 12949; Metazoa - 42488; Fungi - 9587; Plants - 33653; Viruses - 400; Other Eukaryotes - 16109 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR