F01209

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01209

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01209

Determination of introduced cDNA(s)

  • RAFL05-14-G18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-G18 - Resource: pda07305

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-G18 - full reading 
    ACTCATCACA ATAGCGGGAA ACTCATCCGG CTTCTGGAAA TTTCCGTTTA 
    TCCGATTCGT TCTCACGAGA TGATGGCTCG TTACCACAGG AGATCGATGA 
    TCTTGTGCTT AGTTCTGCTC TCATTAAGCA TATCGCCGAG CCAAGGCTTC 
    CTAGGGACAG AGGAAAAGAT CAAATCCGCT GTCTTTTACT CACCAAAACT 
    TGTGATGAAT CCAGGATCAG TTGCAAATCC TTACTTATTC GACATCGATT 
    TCCCAAGAGG TCATATCGGC CTCAAAGCTT TCGATGCTGA AGTGGTTGAC 
    GAAGCGGGCA AACCCGTTCC TCTACACGAG ACCTATCTCC ACCATTGGAT 
    TGTCGAGCCA TACTATGTAC GTAAAGGTTC CAAGCTTCCA CAGAGAGAAA 
    TGTTCAGGAA TCATGGATTT TCCAGGGAAG ATCCTGAAAG CAATCTTGAT 
    TCCAAGTCAG ATATTATTCT TGTGAAAAAT GGAGGGTTGT GCAGGAGTTT 
    AACACTCAGA CATTTCTTTG GTTTAGGATC AGAAACCCGC GAAACCTCGA 
    CGTATGTTCC TGATCCCTAC GCTATTGAAA TCGGTAATCC TGAGGAAACA 
    CCTGATGGTT ATGAATTCAA ATGGCTTCTT AACATTCACG CGATAGACAC 
    CAGAGGTGTG GAAGATAAGA AAGGATGCAT AGAATGTTTT TGTGATCTGT 
    ATAATGTTAC CATTGATGAG TATGGTCGAG CTATAAGGCC TGGATACAAA 
    GGAGGTTTAT ACTGCTGCTA TGATAAGACT CAATGTCGGG TGAAAAGCGG 
    ATTTGACAAT GGGGAGAAAA CAAGAACTCT GTATTTGAAG TATACCGTGA 
    GATGGGTTGA TTGGGACAGC TCGGTTTTGC CCGCTAAGGT TTATATTTTC 
    GATGTTACAG ATTCTTGGGA AAGATCAAAA GGAGATAGCC AAGAACATAT 
    TTGCCATGTG GAATACGAGG TGAAACCGTG CAAAACCAAT GGCGATGGAT 
    GCGTTGACGT TAAGAAAAAG AGCTTAGTGA TGCCATTTGA TGGGTATATT 
    GTCTACGGGG TAGCTCACCA GCACGCTGGT GGTATCGGTG GTGCTCTATA 
    CCGAGAGAAC GGTGAAGGGA TATGCGCTTC AATGCCGAAG TATGGCAATG 
    GAGATGAACC TGGAAACGAA GCTGGTTACA TTGTTGGAAT GTCGTCTTGT 
    TATCCAGCTG ATCCAGTGAA AGTGAGCTAT GGAGAGACAT TGACTTTGGA 
    ATCTAATTAC AGTAATGCCG TTGGTCATAC CGGAGTTATG GGACTCTTTT 
    ACATCCTCGT TGCTCAGCAG CTGCCGGAAC CAGATAGCTC CTTGCCTAAT 
    AAACAACATT TTGAGGCACC TGCGAGAAGC TTGAGCTTTT TAGCCATTTT 
    TGCAGTGACG GTAGTTGTGG CTGTTGTGGT TTTAATAGCC GCCGTGATAT 
    ACCGGAGACA GAAACGGGAA GATGGTTACC AATCACTTAG TACTTAAAAA 
    AGAGCAAAAA CCATGTCGAC TCTATATATG TCTTCAAAGT GAATTCTGTT 
    TGTATACATA GAATAAAAGA TTATTTTGTT GTCATCTTCC TCTGATGTGA 
    TATCTCTGTA ATAGTTACGT GTAAGAAGAA CTTTTCTTTC C

    Gene models with high sequence identity

    1. AT5G61820.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: va...
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    See the detailed result >

    AT5G61820.1

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR