F01216

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01216

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01216

Determination of introduced cDNA(s)

  • RAFL11-04-K22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-04-K22 - Resource: pda17968

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-04-K22 - full reading 
    CGAAGATGGG TTTCAAACTC ATCTCTCTCC TCCTTCTTTT TCTTCCACTT 
    CTAACAGTCA CAATCTTGTC GGGAGTCGAG CAGGCCTTTG CTTCCGACAA 
    GGCACTCCTC GTGACCGGCC GCAACATCAC GGCTGACGGT GGAAGGTCGT 
    CACTGAGAGG GAAGAAGCAG AGGAGAGCAT CAGGATGTAA CTTGTTCCAA 
    GGCCGATGGG TGTTCGATGC TTCTTACCCT TTCTATGACT CGTCCAAGTG 
    TCCTTTCATC GACGGCGAGT TTGACTGTCT CAAGTTCGGC CGACCAGACA 
    AACAGTTCCT CAAGTACTCT TGGCAACCTG AATCTTGCAC CATCCCAAGG 
    TTCGACGGTG GGGCATTTCT GAGGAAATAC AGAGGAAAAC GAGTCATGTT 
    CGTCGGAGAC TCACTGAGTT TAAACATGTG GGAATCGTTG GCCTGTATGA 
    TCCATGCGTC GGTACCAAAC GCCAAGACCA CTTTTCTCAA GCGTACCCCA 
    CTCTCTACTC TCACTTTCCA GGAATATGGA GTAACGTTAT ATCTATATAG 
    AACACCATAC ATAGTAGATA TATCCAAAGA GAGAGTTGGG CGTGTGCTTA 
    ACCTTGGAGC TATTGAAGGA GGTGCTGATG CTTGGAAAAA CATGGACGTT 
    CTTGTCTTCA ACTCTTGGCA TTGGTGGACT CACAAAGGCC AATCTCAAGG 
    GTGGGATTAT ATTAGAGATG GGTCGTCTTT GGTGAGAGAC ATGAACCGTC 
    TTGACGCTTT CTACAAAGGA CTCAGTACTT GGGCTCGATG GGTTGATCAA 
    AACGTCGATA CGGCCAAAAC TCGAGTTTTC TTCCAAGGCA TTTCTCCCAC 
    TCATTACGAG GGAAGGGAAT GGAACGAGCC GAGGAAGACT TGTAGTGGGC 
    AAATGCAGCC GTTGGGTGGA TCAAGTTACC CAAGTGGTCA GCCTCCATCC 
    TCAGGAGTAG TGTCGAAAGT GTTGAGTTCG ATGAAAAAGC CAGTGACCTT 
    GCTCGATATC ACAACTTTGT CTCAGTTGAG AAAAGATGCT CATCCTTCTT 
    CTTATGGTGG CGATGGAGGA ACAGATTGCA GCCATTGGTG CCTCCCAGGG 
    TTGCCTGATA CATGGAACCA ACTTCTCTAC GCAGCTCTTA CGATGTGAAG 
    TGTTAAGATA CTAAAAAGAA AGTGCATAAC ACCTTTATTC TGTAAATGAC 
    ATTCGTAAAT CTTCTAGTGT TGTGTGATGC TATAGAAAAC AGATTTATAA 
    CAAAAGAGAC ATTCTCAGTA TAAAATAACA CATTGGTTTG GTCAAAAAAA 
    AAA

    Gene models with high sequence identity

    1. AT1G29050.1 [+] show detail - TRICHOME BIREFRINGENCE-LIKE 38
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G29050.1

    Model type
    Protein coding
    Short Description
    TRICHOME BIREFRINGENCE-LIKE 38
    Curator Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
    Computational Description
    TRICHOME BIREFRINGENCE-LIKE 38 (TBL38); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 37 (TAIR:AT2G34070.1); Has 1347 Blast hits to 1329 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1344; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR