F01216

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01216

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01216

Determination of introduced cDNA(s)

  • RAFL11-04-K22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-04-K22 - Resource: pda17968

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-04-K22 - full reading
    CGAAGATGGG TTTCAAACTC ATCTCTCTCC TCCTTCTTTT TCTTCCACTT 
    CTAACAGTCA CAATCTTGTC GGGAGTCGAG CAGGCCTTTG CTTCCGACAA
    GGCACTCCTC GTGACCGGCC GCAACATCAC GGCTGACGGT GGAAGGTCGT
    CACTGAGAGG GAAGAAGCAG AGGAGAGCAT CAGGATGTAA CTTGTTCCAA
    GGCCGATGGG TGTTCGATGC TTCTTACCCT TTCTATGACT CGTCCAAGTG
    TCCTTTCATC GACGGCGAGT TTGACTGTCT CAAGTTCGGC CGACCAGACA
    AACAGTTCCT CAAGTACTCT TGGCAACCTG AATCTTGCAC CATCCCAAGG
    TTCGACGGTG GGGCATTTCT GAGGAAATAC AGAGGAAAAC GAGTCATGTT
    CGTCGGAGAC TCACTGAGTT TAAACATGTG GGAATCGTTG GCCTGTATGA
    TCCATGCGTC GGTACCAAAC GCCAAGACCA CTTTTCTCAA GCGTACCCCA
    CTCTCTACTC TCACTTTCCA GGAATATGGA GTAACGTTAT ATCTATATAG
    AACACCATAC ATAGTAGATA TATCCAAAGA GAGAGTTGGG CGTGTGCTTA
    ACCTTGGAGC TATTGAAGGA GGTGCTGATG CTTGGAAAAA CATGGACGTT
    CTTGTCTTCA ACTCTTGGCA TTGGTGGACT CACAAAGGCC AATCTCAAGG
    GTGGGATTAT ATTAGAGATG GGTCGTCTTT GGTGAGAGAC ATGAACCGTC
    TTGACGCTTT CTACAAAGGA CTCAGTACTT GGGCTCGATG GGTTGATCAA
    AACGTCGATA CGGCCAAAAC TCGAGTTTTC TTCCAAGGCA TTTCTCCCAC
    TCATTACGAG GGAAGGGAAT GGAACGAGCC GAGGAAGACT TGTAGTGGGC
    AAATGCAGCC GTTGGGTGGA TCAAGTTACC CAAGTGGTCA GCCTCCATCC
    TCAGGAGTAG TGTCGAAAGT GTTGAGTTCG ATGAAAAAGC CAGTGACCTT
    GCTCGATATC ACAACTTTGT CTCAGTTGAG AAAAGATGCT CATCCTTCTT
    CTTATGGTGG CGATGGAGGA ACAGATTGCA GCCATTGGTG CCTCCCAGGG
    TTGCCTGATA CATGGAACCA ACTTCTCTAC GCAGCTCTTA CGATGTGAAG
    TGTTAAGATA CTAAAAAGAA AGTGCATAAC ACCTTTATTC TGTAAATGAC
    ATTCGTAAAT CTTCTAGTGT TGTGTGATGC TATAGAAAAC AGATTTATAA
    CAAAAGAGAC ATTCTCAGTA TAAAATAACA CATTGGTTTG GTCAAAAAAA
    AAA

    Gene models with high sequence identity

    1. AT1G29050.1 [+] show detail - TRICHOME BIREFRINGENCE-LIKE 38
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G29050.1

    Model type
    Protein coding
    Short Description
    TRICHOME BIREFRINGENCE-LIKE 38
    Curator Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
    Computational Description
    TRICHOME BIREFRINGENCE-LIKE 38 (TBL38); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 37 (TAIR:AT2G34070.1); Has 1347 Blast hits to 1329 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1344; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR