F01225

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01225

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01225

Determination of introduced cDNA(s)

  • RAFL08-16-I18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-16-I18 - Resource: pda04906

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-16-I18 - full reading 
    GTGTGTTCTG CCAAAGTTTC TCTGCAGCTT CTCCTCTTCT CAGAAATTAG 
    GGTTCCGTCT CAAATTACGA GCAGATCTCG TACTCTCTGA TGTCTGAAGA 
    TCCGGAGTAC CGTTGCTTCA TTGGTGGGCT TGCTTGGACA ACGTCTGATC 
    GTGGTCTCAG AGATGCCTTT GAGAAGTATG GTCACCTCGT TGAGGCCAAG 
    GTGGTTCTTG ACAAGTTTTC TGGTCGCTCC CGTGGTTTTG GATTCATCAC 
    TTTCGATGAG AAAAAAGCTA TGGATGAAGC TATTGCAGCA ATGAATGGAA 
    TGGATTTGGA TGGGCGAACT ATCACTGTTG ATAAAGCTCA GCCTCATCAG 
    GGTGGTGCAG GCAGAGATAA TGATGGTGAC CGTGGTCGAG ACCGTGGATA 
    TGATCGTGAT CGCAGTCGTC CCTCTGGTGG GCGAGGTGGT GGAGATTGCT 
    TTAAATGTGG CAAGCCTGGA CATTTTGCAA GAGAGTGTCC TTCTGAAAGT 
    AGTAGAGATG GTGGTGGAAG GTTCAGCTCA AAGGATGATA GGTACAGTTC 
    GAAGGACGAT AGGTATGGTG CAAAAGATGA TAGGTATGGT GCAAAGGAGG 
    ATAGGTATGG TGCAAAGGAT GATAGGTACA GCTCCAAGGA TGATAGGTAC 
    AGCTCCAAGG ATGATAGGTA TGGTAGTAGG GATGGTGGAG GTAGTCGCTA 
    TGGACCTGAT CGCAGTGGTG AACGCGCTGG AGGACGCAGC CGGGATGGTG 
    GCAGCCGTGG AGCTCCAGGA GGTGAGAGGC ACAGTCGTGC TCCATATGAC 
    CGCCCCAGAG CTGGTGGTTT CCACTAGAAT TCTACTCCAA AGGTTAAAGA 
    AGTTGAAGGT TTCTGCTTTC AGCTCGTGTC AAGTCAAAGT TACGCTTGAT 
    GGTCTATTTT CTTCAATGTA TTTGGATAGC TCGAGAAAGA AGATGTGTTC 
    TCTATTTTGG CCCTAAACTC AAGAGTCGAC TATGTTCCTA AAGTGCTCTC 
    TCTCCTTTTG ATATGTTGAT CCCTATGGAA ACCTTGTGCT TGGTTGGTTT 
    GAGACAATTT GAGATGTGCT ACTTTATGCT TATCGTAATG AATGCGTGGG 
    TTATCCCCCA ACACCAAATA TGCAAAAGCC TCAGGATGGT CTGATACTCG 
    GGTTTAGCCG TGAAAATTAA AGACTGATCT ATAAAACTTG TGATGGGATT 
    GGGAAATATA CATTGCTGAT TGATACTTGG CTACTGGAAC TCAAACATCC 
    CTTCATGAGC AACAAATTGT CATTTTCAGG AAAAAGATTG ACTTTGTGCA 
    ATTTTAGATC TTGGCAAGTC AAATCCAATA GTTTTCTTCA ACTAGGGAGA 
    TTTCTACAGC CAAATGGTCT CTGGTTGGCT CGTCTAGTAT AGCTCACTGG 
    GTTTATCTTC GATCTATTCT TTGTGGGTTC TTCGTGCCTC TTCGTCTACT 
    TTGTTTCTTG CTCGTGACCT CTACCTCTGC CTTTGATTCT CAAGCTCTAA 
    ACTCCAGGAA TTGGGAAATG GTGTTAATGT ATATATAGTT AATATACGCT 
    TGAATAGGTA TCCTTACTTT GATAATTTGT TGAAATTGCA TACATAAATA 
    GGTCACACGA GTTATGTCGG GAAAACACTG ACTTGATTAT TTTATACAAG 
    TGAATAGTAT ATGTATGGTT AGAACTTAGA TGCATGACTA GTTCGTTCAC 
    CTTCTTTCAC AATTTTGTAT TGCATACATA CATACATTGC TTAGGTGAAT 
    ATATAATCAA TTTACCATAA ATAAATGACT TTGTAAGTCT CATAATTTAA 
    GACTTTGTTT CTAACATAAA GAAAGACTTT GTAGAACATA TGAGTTGGTG 
    TATAGCTTAA ACGTTGACTC AATTATTTGA TAGAAATCGA ATAGCATAGC 
    TATTCGACGC CACTATTCGG TTACTCGTAC CTCGACCACA CCAAATTAAG 
    AACACTTACC GGAAGAAGAT AAAAGGAGAA AATGGAAACT AATCTCTTGT 
    TGGTAAAGTG TGTCTTATTA GCATCATGTC TCATACATCC CCGTGCTTGC 
    TCTCCTTCTT GCAATTTCCC GGCGATATTC AACTTCGGCG ACTCTAACTC 
    CGACACAGGT GGCCTTTCTG CCTCTTTCGG ACAAGCCCCT TACCCAAATG 
    GCCAAACCTT CTTCCACTCC CCTTCCGGTC GTTTCTCAGA TGGTCGACTC 
    ATCATTGACT TCATAGCGGA GGAGTTAGGT TTACCATACC TAAATGCTTT 
    CTTAGACTCC ATCGGTTCAA ACTTCAGCCA TGGTGCCAAT TTCGCCACCG 
    CTGGCTCCAC CGTCCGGCCA CCAAACGCAA CCATCGCTCA GAGCGGTGTG 
    AGTCCAATCT CTCTCGACGT TCAATTGGTC CAATTCTCCG ATTTCATCAC 
    ACGATCACAA CTCATTCGCA ATCGAGGTGG AGTGTTTAAG AAATTGCTTC 
    CCAAGAAAGA GTATTTCTCT CAAGCATTGT ACACATTCGA CATCGGTCAG 
    AACGATCTCA CCGCTGGACT AAAACTTAAC ATGACTTCAG ATCAAATCAA 
    GGCTTATATA CCAGATGTTC ATGATCAGCT CTCTAACGTC ATTCGTAAGG 
    TGTATAGTAA AGGAGGAAGA AGATTTTGGA TACACAACAC AGCTCCACTT 
    GGTTGTTTAC CTTATGTTTT AGACCGGTTC CCAGTACCGG CTTCTCAAAT 
    CGACAATCAC GGTTGTGCAA TTCCGCGTAA TGAGATTGCT CGATACTATA 
    ACTCTGAACT TAAAAGAAGA GTGATTGAGT TGAGAAAAGA GCTCTCTGAA 
    GCTGCGTTTA CTTATGTTGA TATCTACTCT ATCAAGCTTA CTCTCATCAC 
    TCAAGCCAAG AAACTCGGTT TTAGGTATCC TTTGGTGGCT TGTTGTGGAC 
    ATGGTGGGAA GTACAATTTC AACAAGCTTA TTAAATGTGG AGCTAAAGTT 
    ATGATCAAAG GGAAAGAGAT TGTGCTTGCT AAGTCTTGTA ACGATGTGTC 
    GTTTAGAGTT AGCTGGGACG GTATACATTT CACTGAAACG ACAAACAGTT 
    GGATCTTTCA GCAAATAAAC GACGGGGCGT TTTCGGATCC TCCTCTTCCT 
    GTGAAGTCTG CCTGCACCAG ATAGAAGAAC TTAGGGAATC ATATGACCAA 
    AGTGTCCTTG AAAATGGGGA CAAATAAAAG TTCTTTGGAA TATTTGTTTT 
    TTGTCAAGTT CTAAGAAAAT TCTCATGAAA GTGAAATCAT

    Gene models with high sequence identity

    1. AT3G26430.1 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
      E-value: 0; Score: 99.97

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart RNA recognition motif, RNP-1 2.1e-26
    HMMSmart Zinc finger, CCHC-type 3.5e-06
    HMMPanther DC50 (DC23) 5.5e-59
    HMMPanther RNA-BINDING PROTEIN 5.5e-59
    HMMPanther LATERAL SIGNALING TARGET PROTEIN 2 2.2e-05
    HMMPanther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 2.2e-05
    superfamily RNA-binding domain, RBD 3.8e-26
    superfamily Retrovirus zinc finger-like domains 1.5e-06
    ProfileScan RNA recognition motif, RNP-1 19.28
    ProfileScan Zinc finger, CCHC-type 11.565
    HMMPfam Lipase, GDSL 1.1e-43
    HMMPfam RNA recognition motif, RNP-1 8.2e-21
    HMMPfam Zinc finger, CCHC-type 2.2e-08
    Gene3D Nucleotide-binding, alpha-beta plait 4.8e-28

    See the detailed result >

    AT3G26430.1

    Model type
    Protein coding
    Short Description
    GDSL-like Lipase/Acylhydrolase superfamily protein
    Computational Description
    GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: alpha-fucosidase 1 (TAIR:AT1G67830.1); Has 3218 Blast hits to 3172 proteins in 104 species: Archae - 0; Bacteria - 74; Metazoa - 0; Fungi - 6; Plants - 3136; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR