F01318

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01318

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01318

Determination of introduced cDNA(s)

  • RAFL09-76-C09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-76-C09 - Resource: pda17838

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-76-C09 - full reading 
    CCTGGGAGAA GAAAAAGTTG AAAAAATTGT AAAGTCAGTC TCTCCGACTC 
    TTCCTTCCTT CCGTGTTCAC CATTGCTACA CGTTCTCCAC GAACTTTCCG 
    ATGCCCAGTC GTCGGAGACA TAGCTACACC GTCGGATCTC CTGCAACCAC 
    ATCTTCCAAT TACAGTAACA CTACTTTCAC CGATCGTTCC TTCCCGACAA 
    CCCCTGCCCG TACATCCACC GACACAACCA CCTCCATCGC TCGTCGCATC 
    TCCGGTATCT TCATCAACTG CTTCACTCCT CCCGATTCCG TTTCCTCCAA 
    CTACATCGAC AATTCAAAGT CCTCTTCCGA CAATAATATC CGTAGTAGAC 
    GTAGCTCAAC AGGAAGTAGT AGTGTACAGA GGAGTTATGG AAATGCAAAC 
    GAAACAGAGC ATACAAGATT CACCTTCGAT GAAATCTACG ACGCGACCAA 
    GAACTTCTCT CCGTCCTTTA GGATCGGACA AGGCGGTTTT GGCACTGTTT 
    ACAAGGTCAA ACTCAGAGAT GGCAAAACCT TTGCTGTGAA ACGTGCCAAA 
    AAGAGTATGC ATGACGACCG TCAAGGTGCA GATGCAGAGT TTATGAGTGA 
    GATTCAGACA TTAGCTCAAG TTACTCATTT GAGTTTGGTT AAATACTATG 
    GATTTGTTGT TCATAACGAC GAGAAGATTC TCGTTGTGGA GTATGTAGCC 
    AATGGAACTC TTAGAGATCA CTTGGATTGT AAGGAAGGAA AGACTCTCGA 
    CATGGCGACT CGGTTAGATA TCGCAACCGA TGTAGCTCAT GCCATAACCT 
    ATCTTCACAT GTATACACAG CCACCTATCA TCCACAGAGA TATCAAATCT 
    TCAAACATTC TCCTCACTGA GAATTACAGA GCCAAGGTTG CTGATTTCGG 
    GTTTGCAAGA TTAGCTCCAG ATACTGATTC AGGAGCCACG CATGTGTCAA 
    CACAAGTCAA AGGAACCGCT GGTTACTTAG ACCCAGAGTA CTTAACAACG 
    TATCAACTCA CAGAGAAAAG TGACGTCTAC TCTTTTGGTG TACTGCTCGT 
    CGAGCTTCTC ACAGGTCGGC GTCCCATCGA GCTTAGCAGA GGACAAAAAG 
    AACGCATCAC CATTAGATGG GCGATCAAGA AGTTCACGAG TGGAGATACG 
    ATATCGGTAT TGGACCCGAA GCTAGAACAG AATTCAGCGA ACAACTTAGC 
    ATTAGAGAAG GTATTGGAGA TGGCGTTTCA ATGTCTAGCT CCTCATAGAC 
    GTTCGAGACC AAGCATGAAA AAATGCAGTG AGATTTTGTG GGGAATTCGT 
    AAAGATTACA GAGAGTTGCT CAACACAAGT CTTTGATGAT ATTATTCTCT 
    ACGCTTATAT AATATGGTTT TGAATACACA ATTATATATT ATTTGTTTGA 
    ATATTAATTT GTCATACACG ATGCATTCTT GTACGAGAAT TGTTGATTTG 
    TAATTGATTT TGAAATTTGT AGTATTATAT TAACGCAAAA A

    Gene models with high sequence identity

    1. AT4G00330.1 [+] show detail - calmodulin-binding receptor-like cytoplasmic kinase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 1.1e-78
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 1e-39
    HMMSmart Tyrosine-protein kinase, catalytic domain 4.8e-24
    HMMPanther WALL-ASSOCIATED KINASE 1.6e-177
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.6e-177
    Gene3D no description 2.5e-18
    Gene3D no description 2.3e-48
    HMMPfam Serine/threonine-protein kinase-like domain 4.1e-49
    ProfileScan Protein kinase, catalytic domain 38.746

    See the detailed result >

    AT4G00330.1

    Model type
    Protein coding
    Short Description
    calmodulin-binding receptor-like cytoplasmic kinase 2
    Curator Summary
    high overall homology to CRCK1
    Computational Description
    calmodulin-binding receptor-like cytoplasmic kinase 2 (CRCK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calmodulin-binding receptor-like cytoplasmic kinase 1 (TAIR:AT5G58940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR