F01349

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01349

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01349

Determination of introduced cDNA(s)

  • RAFL09-21-A20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-21-A20 - Resource: pda08019

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-21-A20 - full reading
    AAAGCTTAAC AACCTCCACT AGAGACTTTC TTGAGCAAAA AAGATTGGTT 
    ATAAAGGACC AACCATTGTC ATGTTATTGA GTGTCATTTT TGTGAGGGAG
    AGAATTAAGA GAGCAAAATG AGCATAAATA GGAATCTGTT GAATATCATA
    ATAATCCTTT GTATATGTCT CAATTTGGGT TGTAACGATG GAGCTCAAGA
    AAGAGAGACT GATTCTCATA CTATCCAAGT CAGCTCTCTC CTCCCTTCAT
    CATCATCATC TTGTGTTCTT TCTCCCAGAG CGTCTACTAC AAAGTCTTCA
    CTGCACGTGA CGCATAGACA CGGCACGTGT TCGCGTCTAA ACAATGGCAA
    GGCCACGAGT CCAGACCATG TCGAGATCCT AAGACTCGAC CAGGCTCGCG
    TAAACTCAAT CCACTCAAAA CTATCGAAGA AACTCGCAAC AGATCACGTC
    AGTGAAAGCA AGTCAACGGA TCTACCGGCT AAAGACGGAA GCACACTCGG
    TTCAGGTAAC TACATCGTGA CGGTCGGCCT CGGGACACCA AAGAACGATC
    TATCACTAAT CTTCGACACT GGAAGCGATT TAACGTGGAC TCAGTGTCAG
    CCATGTGTTC GAACTTGCTA TGACCAGAAG GAACCAATCT TTAACCCTTC
    TAAGTCTACT TCTTACTACA ACGTATCCTG CTCATCGGCT GCGTGTGGTT
    CTCTCTCTTC TGCTACAGGA AACGCCGGAA GCTGTTCGGC TTCGAATTGC
    ATCTACGGTA TTCAATACGG CGATCAATCG TTCTCCGTCG GATTTCTCGC
    CAAGGAGAAG TTTACACTAA CGAACTCCGA CGTATTTGAC GGCGTTTATT
    TCGGTTGCGG CGAGAACAAC CAAGGACTTT TCACCGGTGT CGCCGGACTT
    CTCGGTCTTG GTCGTGACAA GCTTTCGTTT CCGTCGCAGA CGGCAACGGC
    TTACAATAAG ATCTTCTCTT ACTGCCTCCC TTCCTCCGCT AGCTACACCG
    GACATCTCAC ATTCGGATCC GCCGGAATCT CCAGATCCGT TAAATTCACA
    CCAATTTCAA CCATCACTGA TGGAACTTCC TTCTACGGCC TTAATATCGT
    CGCAATCACC GTCGGCGGTC AGAAATTGCC GATTCCTTCA ACTGTATTCT
    CTACTCCGGG AGCTTTAATC GATTCCGGCA CCGTTATCAC TCGTCTCCCG
    CCGAAAGCCT ACGCGGCGTT AAGAAGCTCG TTCAAGGCGA AGATGTCAAA
    GTATCCGACC ACGTCGGGCG TCTCGATCTT GGACACGTGT TTCGATCTCA
    GCGGGTTTAA GACGGTGACT ATCCCGAAAG TGGCGTTCTC TTTCAGCGGT
    GGCGCCGTCG TGGAGCTTGG TTCGAAAGGG ATATTTTACG TGTTTAAGAT
    ATCTCAGGTT TGTCTGGCGT TTGCAGGGAA TAGCGATGAC AGTAACGCTG
    CCATCTTTGG AAACGTTCAG CAGCAAACGC TAGAAGTTGT GTATGATGGT
    GCGGGTGGGC GGGTCGGGTT TGCTCCAAAC GGGTGTAGTT AAGTTAGTTA
    ATGAAAAACA GAACGGGGTA AATTTTAAAT TTATGGATTT GGCACAAATT
    AGCTTTATCC TTAATCAAGT GTGTAATTTG GGTAAAGATC GGAATTCGTG
    ATGGTCTTTG AAGTAATTGT ATAGTAATAA GTGTGCATGA TACAACAATT
    ACAAGAACAA ACTGTTTATT GTAAAATTTT ATTCCAATAC AACTATACAA
    GATG

    Gene models with high sequence identity

    1. AT5G10770.1 [+] show detail - Eukaryotic aspartyl protease family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 4.4e-131
    HMMPanther Peptidase A1 4.4e-131
    Gene3D Peptidase aspartic, catalytic 4.8e-11
    Gene3D Peptidase aspartic, catalytic 7.8e-43
    superfamily Peptidase aspartic 8.4e-97
    FPrintScan Peptidase A1 1.3e-05
    FPrintScan Peptidase A1 1.3e-05
    FPrintScan Peptidase A1 1.3e-05
    HMMPfam Peptidase A1 8.2e-22

    See the detailed result >

    AT5G10770.1

    Model type
    Protein coding
    Short Description
    Eukaryotic aspartyl protease family protein
    Computational Description
    Eukaryotic aspartyl protease family protein; FUNCTIONS IN: DNA binding, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G10760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR