F01544

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01544

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01544

Determination of introduced cDNA(s)

  • RAFL09-99-G05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-99-G05 - Resource: pda17944

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-99-G05 - full reading 
    GAATCAACAA AATCGTCTTC CTCGTTCGTA TCGTTCACTC AGCTTTTTTC 
    CCATCTTCTT CTTCGCATCA CATATTCTTC ATTACTAATA TATCTCCTAC 
    TCCAGTCTTC CTCCATGAAT TCCTGTAGCT TAGGAGCTCC TAAAGTTAGA 
    ATTTTTGCAA CAAATTTCAG TAGATTAAGA TGTGGAAACT TGCTGATACC 
    GAACAATCAA AGACTATTTG TTGACCAAAG CCCTATGAAG TATCTGAGTC 
    TGAGAACGAC TCTGCGATCT GTGAAAGCTA TCCAATTGTC TACTGTCCCA 
    CCTGCAGAAA CAGAAGCTAT TGCAGACGTA AAAGATTCTG ACGAGACCAA 
    ATCAACTGTT GTGAATACTC ACCTCATGCC CAAGTCCTCC GAGGTGGAAG 
    CACTCATCAG CGAAATCACC GATTCCTCAT CCATTGCAGA GTTTGAACTC 
    AAACTGGGAG GTTTCCGCCT GTATGTAGCA AGGAAATTAA CTGACGAAAG 
    TAGTCCACCA CCTCAGCAAA TTCAGCCTGT GGTTGCTGCA AGCGCAACTC 
    CTGAGGGGGT TCACACTAAT GGCTCAGCTA CTTCTTCGTC ATTGGCTATC 
    ACAAAAACAT CATCTTCTTC GGCAGACAGA CCACAAACAC TCGCTAACAA 
    AGCTGCTGAT CAGGGTTTAG TGATTCTCCA ATCTCCAACG GTCGGTTATT 
    TCAGGAGATC CAAGACCATA AAAGGGAAAC GCACTCCTAC AATCTGTAAA 
    GAGAAAGACA TAGTGAAAGA AGGTCAAGTT CTATGCTACA TTGAACAGCT 
    CGGTGGCCAA ATCCCAGTTG AGTCTGATGT TTCCGGAGAG ATTGTCAAAA 
    TACTCCGCGA AGATGGCGAG CCTGTAGGAT ACAACGATGC TCTCATCACA 
    GTACTTCCCT CATTTCCTGG CATCAAGAAG CTTCAGTAAG AACTGATTTT 
    GGCTTAATTG TGTTTGTGCT TTGTGTATTT TGCTTCTTAG TTTTTCTCCA 
    CATAGACAAA AATAAGCTCT ACTCCAAAAA ATCTTTGTCC GTACCATTAC 
    CTTTGTTTTA CCAAAATTTA ATTGAAACTT TTTTGTTTAC CAAAAAAA

    Gene models with high sequence identity

    1. AT1G52670.1 [+] show detail - Single hybrid motif superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Biotin/lipoyl attachment 10.834
    ProfileScan FERM domain 9.145
    HMMPfam Biotin/lipoyl attachment 2.5e-08
    superfamily Single hybrid motif 2.9e-11
    HMMPanther PYRUVATE CARBOXYLASE 2.4e-05
    HMMPanther CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA 2.4e-05
    Gene3D no description 3e-10

    See the detailed result >

    AT1G52670.1

    Model type
    Protein coding
    Short Description
    Single hybrid motif superfamily protein
    Computational Description
    Single hybrid motif superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT3G15690.2); Has 3136 Blast hits to 3136 proteins in 1282 species: Archae - 2; Bacteria - 2438; Metazoa - 2; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR