F01636

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01636

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01636

Determination of introduced cDNA(s)

  • RAFL05-04-N20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-04-N20 - Resource: pda02450

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-04-N20 - full reading 
    ATTCATCGTC CTCTCTCGCT TGACCTACAA CACCCGATTC TCTAATCGAA 
    ACCGTTTCTC TCTTTTTGAT CAGATCTCAG ATCTTTCCCT CTTTGATTCT 
    TCTTCCTTAG ATCGATTCTC TCTAGAAACA ACAATGGCGT CTGGGCGTGA 
    AGAGTTCGTA TACATGGCTA AGCTCGCGGA GCAAGCGGAG AGGTACGAAG 
    AGATGGTAGA GTTTATGGAG AAAGTCTCCG CCGCCGTTGA TGGCGATGAA 
    CTCACCGTAG AAGAGCGAAA TCTTCTCTCC GTCGCTTATA AGAATGTGAT 
    TGGTGCTCGC CGTGCCTCGT GGCGTATCAT TTCATCGATC GAGCAGAAGG 
    AAGAGAGCCG TGGTAACGAT GACCACGTCA CGGCGATCCG TGAATATAGG 
    TCTAAGATCG AGACGGAACT CTCCGGAATC TGCGACGGAA TCCTTAAGTT 
    GCTTGACTCT AGACTCATCC CTGCCGCTGC TTCTGGTGAT TCCAAGGTCT 
    TTTACCTTAA GATGAAGGGA GATTATCACA GGTACTTGGC TGAGTTTAAG 
    ACTGGTCAAG AGAGGAAAGA CGCCGCCGAA CATACACTCG CCGCTTACAA 
    ATCTGCTCAG GATATTGCTA ATGCAGAGCT TGCTCCAACA CACCCAATTC 
    GTCTTGGTCT TGCATTGAAC TTCTCTGTGT TCTATTACGA GATCCTCAAT 
    TCTCCTGATC GTGCCTGTAA CCTCGCCAAA CAGGCCTTTG ATGAGGCGAT 
    TGCAGAGTTG GACACTCTTG GTGAAGAGTC ATACAAAGAC AGTACCTTGA 
    TCATGCAGCT TCTTCGTGAC AATCTCACTC TCTGGACATC TGATATGCAG 
    GATGATGCTG CGGATGAGAT CAAGGAAGCA GCAGCGCCAA AACCGACCGA 
    GGAACAGCAG TGATCTTTTG AGTGAAACTG CTAGTTTTCT TCTAGGGTTT 
    GGAATTTCTT CTCTTTCTCG TCCATATGTT TTTCTTAATC CATCTAAGAG 
    GTCGCTCTTG CCATTTCGCT CATCTTCAAA AGCTTATTCA TTCATCATAT 
    TTGTGGCAAG TCTGAACCAT CAATCATCTT TTTATCTCTT TTTAATTTAT 
    TTTCTCTTTT CTTATTTCTT TGTTGTTATC GATTTCAATG TCTGTGTAAT 
    CGAAACTTGC TTTCTTTTCT CATCAATTTG AAGATCATAA AGTCTCTTGT 
    CTCTT

    Gene models with high sequence identity

    1. AT1G78300.1 [+] show detail - general regulatory factor 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam 14-3-3 protein 2.2e-115
    HMMPanther 14-3-3 protein 9.2e-211
    Coil coiled-coil 0
    HMMSmart 14-3-3 protein 4.1e-204
    superfamily 14-3-3 protein 1.3e-107
    PatternScan 14-3-3 protein 0
    PatternScan 14-3-3 protein 0
    Gene3D 14-3-3 protein 1.5e-107
    FPrintScan 14-3-3 protein 2.6e-88
    FPrintScan 14-3-3 protein 2.6e-88
    FPrintScan 14-3-3 protein 2.6e-88
    FPrintScan 14-3-3 protein 2.6e-88
    FPrintScan 14-3-3 protein 2.6e-88
    FPrintScan 14-3-3 protein 2.6e-88
    HMMPIR 14-3-3 protein 1.1e-179

    See the detailed result >

    AT1G78300.1

    Model type
    Protein coding
    Short Description
    general regulatory factor 2
    Curator Summary
    G-box binding factor GF14 omega encoding a 14-3-3 protein
    Computational Description
    general regulatory factor 2 (GRF2); FUNCTIONS IN: protein phosphorylated amino acid binding; INVOLVED IN: brassinosteroid mediated signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GF14 protein phi chain (TAIR:AT1G35160.1); Has 2698 Blast hits to 2688 proteins in 383 species: Archae - 0; Bacteria - 0; Metazoa - 1259; Fungi - 318; Plants - 766; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR