F01747

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01747

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01747

Determination of introduced cDNA(s)

  • RAFL04-16-C20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-C20 - Resource: pda00586

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-16-C20 - full reading
    ATGTATTCTT CTCCTTGTCC TTCCTTACTC TCTATATTTT TCTCAATTCT 
    CCGATTTGAT CCAACGATTT CACAGATCTC TGATCTAAAT GGCATCCAAC
    GGTGATAAAG GACTGATCGT TAGCTTCGGC GAGATGCTAA TCGATTTCGT
    CCCTACCGAA TCAGGCGTCT CTCTCGCCGA AGCTCCTGGA TTCCTCAAAG
    CTCCAGGCGG TGCTCCCGCT AACGTCGCAA TCGCTGTTTC TCGTCTCGGT
    GGACGATCTG CTTTCGTCGG AAAACTTGGA GACGACGAGT TCGGTCATAT
    GTTGGCTGGG ATTTTGAGGA AGAACGGTGT TGATGATCAG GGGATTAACT
    TCGATACTGG AGCTAGAACT GCTTTAGCTT TCGTTACGTT ACGTGCTGAT
    GGAGATCGTG AGTTTATGTT TTACCACAAT CCTAGCGCCG ATATGCTTCT
    TCGTCCTGAT GAACTCAATC TCGACCTCAT CAGATCCGCG AAAGTGTTTC
    ACTATGGATC AATAAGTTTG ATAGTGGAGC CGTGTAGGTC AGCTCATTTG
    AAGGCCATGG AAGTGGCGAA AGAAGCAGGA GCTCTTCTTT CCTATGACCC
    AAACCTCAGG GAGCCTCTGT GGCCATCAAA AGAAGAAGCC AAAACACAGA
    TCATGAGCAT TTGGGACAAA GCTGAGATCA TCAAGGTGAG CGATGTTGAG
    CTTGAGTTTC TAACTGGAAG CAACAAGATT GATGATGAGA CCGCGTTGAC
    CTTGTGGCAT CCCAACTTGA AGCTGTTGTT AGTCACTCTT GGTGAAAAGG
    GCTGTCGGTA TTACACCAAG ACTTTCAAAG GAGCCGTTGA CCCTTTCCAT
    GTGAACGCTG TGGACACAAC CGGAGCTGGA GATTCCTTTG TCGGTGCTCT
    TCTAAACCAG ATTGTCGATG ATCGATCCGT TCTCGAGGAC GAAGAGAGAT
    TGAGGAAAGT GCTGAGATTC GCAAATGCTT GTGGAGCAAT CACAACGACC
    AAAAAAGGAG CCATTCCAGC TCTTCCCTCA GATGCTGAAG TTCGGAGCTT
    TCTCGAAAAG AAATAGAAAC AAAACAAACT CAAGCTTCTA TTACGTAATC
    TGTTTCCGCG ATTATCTTCT CTTTTTGTAT TCTTGTTTTC GGATGGTTGA
    ATCGAGAAGA GAAACAAATT CGGCATTCCG CTCTGTTTTT GTTTCTCTTC
    TTCAAATGTA ATGATTTAGA AAAGACGTAT GTTGCAATTT AAGGCTTCAC
    TTGCTAATAA AATGATAAGG TTTTTC

    Gene models with high sequence identity

    1. AT2G31390.1 [+] show detail - pfkB-like carbohydrate kinase family protein
      E-value: 0; Score: 99.84

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 9.2e-91
    FPrintScan Ribokinase 0.0000026
    FPrintScan Ribokinase 0.0000026
    PatternScan Carbohydrate/puine kinase, PfkB, conserved site 0
    PatternScan Carbohydrate/puine kinase, PfkB, conserved site 0
    HMMPanther FRUCTOKINASE 2.6e-145
    HMMPanther SUGAR KINASE RELATED 2.6e-145
    superfamily Ribokinase-like 5.7e-86
    HMMPfam Carbohydrate/purine kinase 2.5e-86

    See the detailed result >

    AT2G31390.1

    Model type
    Protein coding
    Short Description
    pfkB-like carbohydrate kinase family protein
    Computational Description
    pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 18509 Blast hits to 18503 proteins in 2397 species: Archae - 386; Bacteria - 14053; Metazoa - 143; Fungi - 116; Plants - 466; Viruses - 0; Other Eukaryotes - 3345 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR