F01828

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01828

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01828

Determination of introduced cDNA(s)

  • RAFL05-03-B20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-03-B20 - Resource: pda00797

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-03-B20 - full reading 
    AACAAATTCC TACACCAATA TCTTTAGCTA GAGAGAAAAA AAGAGTGAGG 
    AAACTAGAGA GAGAGACCAC CCAATAATGG TGAGGTTCGA GAAGGTTCAT 
    TTAGTGTTAG GGTTAGCTCT GGTTCTAACT CTGGTCGGAG CTCCGACCAA 
    AGCCCAAGGA CCTGTTTGCG GTGCAGGCCT GCCTGACAAA TTTAGCAGAT 
    TAAACTTCCC TGAAGGCTTC ATTTGGGGAA CCGCAACAGC AGCATTTCAG 
    GTTGAAGGAG CTGTTAATGA AGGTTGCAGA GGTCCAAGCA TGTGGGATAC 
    TTTCACTAAG AAGTTCCCAC ATAGATGTGA AAATCATAAC GCTGATGTTG 
    CTGTGGATTT CTATCATCGT TACAAGGAAG ATATCCAGTT GATGAAAGAC 
    CTTAACACTG ATGCTTTTAG ACTTTCTATT GCGTGGCCCA GAATATTCCC 
    CCATGGAAGG ATGTCTAAGG GAATAAGCAA AGTGGGAGTC CAATTCTACC 
    ACGACCTCAT CGATGAGCTT CTCAAAAACA ATATAATACC ATTAGTTACA 
    GTCTTTCATT GGGATACTCC CCAAGACTTG GAAGATGAAT ATGGTGGTTT 
    CTTAAGTGGT CGCATCGTGC AAGATTTTAC CGAATATGCG AATTTCACTT 
    TCCACGAATA TGGACACAAA GTGAAACATT GGATCACATT TAACGAGCCA 
    TGGGTGTTTA GTCGTGCCGG TTACGACAAC GGAAAGAAAG CTCCGGGACG 
    TTGTTCGCCG TACATCCCCG GTTATGGACA GCATTGTCAG GATGGGCGGT 
    CTGGATACGA AGCTTATCAA GTCAGTCACA ACTTACTCTT GTCGCATGCT 
    TACGCTGTTG ACGCATTCAG AAACTGCAAA CAGTGTGCTG GAGGTAAAAT 
    TGGAATTGCA CACAGTCCAG CTTGGTTCGA ACCACAAGAC CTTGAGCATG 
    TTGGAGGTTC CATTGAACGT GTGCTTGATT TCATCCTAGG ATGGCATTTG 
    GCTCCAACAA CTTATGGAGA TTATCCACAA TCGATGAAGG ATCGTGTCGG 
    TCATAGATTG CCAAAATTCA CAGAAGCTGA GAAGAAGTTG CTAAAGGGTT 
    CTACAGATTA CGTAGGAATG AATTACTATA CTTCAGTGTT TGCAAAAGAA 
    ATTAGCCCTG ATCCTAAGAG TCCGAGTTGG ACGACTGATT CTCTTGTTGA 
    TTGGGATAGC AAGAGTGTGG ATGGATACAA AATTGGTAGC AAGCCGTTTA 
    ATGGTAAACT GGATGTGTAT TCAAAAGGTT TGAGATACCT TTTGAAGTAT 
    ATTAAGGATA ACTATGGCGA CCCAGAAGTT ATCATTGCCG AGAATGGATA 
    CGGAGAAGAC CTTGGAGAGA AGCACAATGA CGTAAACTTT GGGACACAAG 
    ATCACAACAG AAAATATTAT ATCCAAAGGC ATCTCTTGAG TATGCACGAC 
    GCCATTTGCA AGGACAAAGT GAACGTTACG GGATACTTTG TGTGGTCTTT 
    GATGGACAAC TTTGAGTGGC AAGATGGGTA CAAGGCGAGG TTCGGACTTT 
    ACTACATCGA TTTCCAGAAC AACTTGACCC GTCACCAAAA AGTTTCGGGC 
    AAATGGTATT CCGAATTCCT CAAACCACAG TTTCCAACCT CCAAGCTGAG 
    GGAAGAACTC TAGATGATCA AGAATCCTAT CGGGACAAAA TAATTGAGTA 
    CAAGAGTCTT GAAGATGTTG TTGAGGATAA TATCAGTTTG TGTGTTCTAT 
    GGATCGTTTT CATCTACCGG TCCTTCCTAT GTTAGAAGGA CTTGTGAGTT 
    GTTCGAGTTT TAATAATATC AATAAATGTC TTCTTTTTTA ATATATGTTG 
    AGTTAATAAT TAAATCTGCT TATCGAAAAG AACAGATAAA ATAG

    Gene models with high sequence identity

    1. AT1G52400.1 [+] show detail - beta glucosidase 18
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther BETA-GLUCOSIDASE 4.9e-304
    HMMPanther Glycoside hydrolase, family 1 4.9e-304
    superfamily Glycoside hydrolase, catalytic core 1.1e-164
    Gene3D Glycoside hydrolase, subgroup, catalytic core 1e-160
    FPrintScan Glycoside hydrolase, family 1 1.1e-21
    FPrintScan Glycoside hydrolase, family 1 1.1e-21
    FPrintScan Glycoside hydrolase, family 1 1.1e-21
    FPrintScan Glycoside hydrolase, family 1 1.1e-21
    FPrintScan Glycoside hydrolase, family 1 1.1e-21
    PatternScan Glycoside hydrolase, family 1, active site 0
    HMMPfam Glycoside hydrolase, family 1 3.6e-152

    See the detailed result >

    AT1G52400.1

    Model type
    Protein coding
    Short Description
    beta glucosidase 18
    Curator Summary
    encodes a member of glycosyl hydrolase family 1, located in inducible ER bodies which were formed after wounding, required in inducible ER body formation
    Computational Description
    beta glucosidase 18 (BGLU18); FUNCTIONS IN: abscisic acid glucose ester beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, identical protein binding; INVOLVED IN: in 6 processes; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 19 (TAIR:AT3G21370.1); Has 11362 Blast hits to 11017 proteins in 1473 species: Archae - 142; Bacteria - 7866; Metazoa - 708; Fungi - 200; Plants - 1449; Viruses - 0; Other Eukaryotes - 997 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR