F01841

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01841

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01841

Determination of introduced cDNA(s)

  • RAFL05-12-O15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-12-O15 - Resource: pdz87473

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-12-O15 - 5 prime EST 
    GATATCTCTC CTTCCTACTT CCTCGGTTTC ATCGTCCACT GTCTCAACAA 
    TGGCGTCATT GTCAGGTACC TTGCGTCAAG ATCTGTGCTC TGAACAGGCG 
    GGTCGGATCT CTCCCTGGAA TCTCTACTCA AAGATGGCAG CCGCAACCCA 
    ATGGGATCTC CTTTCCCTCC GATGTTTCTC AGAATCATTC TGCATTCTGG 
    AGGTTGCGTG CAACAACTAA TGAGGTTGTT TCTAACTCCA CTCCAATGAC 
    TAATGGTGGG TATATGAACG GAAAAGCGAA AACCAATGTT CCTGAACCCG 
    CCNAGCTCTC TGAATTTATG GCTAAAGTCT CTGGTCTTCT TAAGCTTGCG 
    GATTCAAAAG ACATAGTGGA ACTTGAACTA AAGCAGCTCG ACTGTGANAT 
    CGTTATTCGA AAGAAGGAAG CTTTACAGCA AGCTGTACCA CCAGCTCCAG 
    TTTATNACTC AATGCCTCCT GTAATGGCAG ACTTTTTCAA TGCCCT

    Gene models with high sequence identity

    1. AT5G15530.1 [+] show detail - biotin carboxyl carrier protein 2
      E-value: 0; Score: 98.97

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-12-O15 - 3 prime EST 
    GCGAGGCTAC AAAATACATT AGTTTCGCAG AAAACTAAAA AGCAAAGTGT 
    AGTACGTTAC GTGAAATCCC AAAAGATGGG TCAATTATTG AAGCGACAAG 
    CAGAAATCCG AAACCAACCA ACTTAAGCTG AAATAATTAC TTGATGAGTT 
    TTAGCACGTT GCTATAGCTT AACCGAGACT TTGAAGATGT TTTGAAGCAG 
    CTAAAAGGAT CCTTCTTCGT TTCAAGGTGC GATGACAAAA AGAGGCGTGT 
    CAACGCTGAC TGGTTTTCCA TCTTCAGCCA GTAGTTCCAT GATGGTTCCT 
    GACTTCTCAG CCTCAATCTC GTTCATCAGT TTCATAGCTT CGATAATACA 
    AACAATT

    Gene models with high sequence identity

    1. AT5G15530.1 [+] show detail - biotin carboxyl carrier protein 2
      E-value: 0; Score: 100.00

    AT5G15530.1

    Model type
    Protein coding
    Short Description
    biotin carboxyl carrier protein 2
    Curator Summary
    biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA,
    Computational Description
    biotin carboxyl carrier protein 2 (BCCP2); FUNCTIONS IN: biotin binding; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Biotin-binding site (InterPro:IPR001882), Single hybrid motif (InterPro:IPR011053), Acetyl-CoA biotin carboxyl carrier (InterPro:IPR001249), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: chloroplastic acetylcoenzyme A carboxylase 1 (TAIR:AT5G16390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR