F01922

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01922

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: F01922

Determination of introduced cDNA(s)

  • RAFL06-67-D17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-67-D17 - Resource: pda03268

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-67-D17 - full reading 
    AATGAGAAAA ACCTTATCCA AACTTTTAAA ATGCCCGTGG CGATCTCTCT 
    CCCAACCTCA TCTACTTCTC ATTTCTTCCC TCGCCGCCGC GGCCATGCAA 
    ATCACCGATA TCAACGCTTT TCCGGAGCTC AATCTTCCAC GGAAGATCCG 
    TACATTCGGA AGAATCAAAC TGGCGTCATC ATCATCGGCG CTGGACTCGC 
    TGGTTTAGCC GCCGCAAACC AGCTCACCTC CAAACGAATC CCTTTCCTAC 
    TCCTCGAAGC TTCCGATGGC GTCGGCGGAC GCGTCCGTAC AGATATCGTC 
    GACGGCTTCT TTCTCGACAG AGGATTTCAG ATTTTCATCA CCGCGTACCC 
    CGAAGCTAAA AAGCTTCTAG ATTATGAAGC ACTGGATCTG CAGAGATTCT 
    ACGCCGGAGC TAAGGTGTTT TACGGCGGTA AATTTCACAC CGTCGCTGAT 
    CCTCTCCGAC ATTTTTGGGA TTCGGTGGCA TCTCTCGCGA ATCCGATCGG 
    ATCCGTCGTT GACAAAGGGC TTATCGCTTT GACGAGAGCT AGGGTTCTAA 
    TCAAGTCAGA CGAAGAGATA TTGACTGCCG CCGATGAAGT TCCCACCATT 
    GATCTCCTCC GTAAGATCGG TTTCTCCGAA ACGATTCTTG ATCGGTTCTT 
    CCGACCATTC TTCGGCGGAA TTTTCTTCGA CAGAGACCTC GAGACGACCT 
    CGAAGCTCTT CGATTTCGTT TTCCGGTGTC TTGCTCTCGG AGAAAACACA 
    CTTCCAGCCA TGGGAATCGG AGAAATCTCG AACCAGTTGG CAGCGAAGTT 
    ACCCGCTAAG TCCGTCTTGT TGAACACAAG GGTCGCTTCT ATTGAGTATC 
    CAAATGGATC GGGTTCGGAT CCACCTAGCG TGAGGCTCCA AGACGGCAGC 
    GTTATGAAGG CAGAGCTAGG TGTCATAATC GCCGTCGAGC AACCGGAAGT 
    GAATAAGCTT CTCGATGGGA TCAGAGACCC GGTTATAACA AAACCAGCTC 
    GGAGCACTAT TTGTCTTTAC TTCACAGCTG AACCGAACCA AATACCGGTA 
    CAAGACCCGG TTCTATTTCT CAACGGGTCA AATTCCGGTA TAATCAACAA 
    CATGTTCTTC GCTACAAACG TTGCTCGGAC ATACGCGCCA CCGGGAAAGG 
    CTCTGGTTTC GGTATCATTG ATCGGATTGT TTGAGGATAG AACCGATGAT 
    GATTTAGCAG CAGAAGTTCT TAGAGAACTC TCTGGTTGGT TTGGTGAGTC 
    TCCGGTTATG TCATGGAAAC ATTTGAAAAC ATACCGGATC CAATTCGCTC 
    AGCCTAACCA ATGTCCACCC ACTGATTTGG TCAAGAGTCC TCGGGTCGGG 
    TCGGGTCTTT ACTTGAGCGG TGATTACATG ACTTCTGCTA CATTTGATGG 
    AGCTTTGGTC TCTGGGAGAC GAGCCGTGGA AGTTTTGCTA CGAGAAACGG 
    GACTAATCAA ATAGATTTTT TTTGTTATTT AAGATTCTTT GTATGGCTTA 
    ATTCATGTCT TGTATGTAGA AGTATGTATC CTCTAAGATC ATATGTTGAC 
    AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT3G09580.1 [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Amine oxidase 7.5e-46
    Gene3D no description 1.1e-22
    superfamily FAD/NAD(P)-binding domain 5e-31
    HMMPanther AMINE OXIDASE 1.3e-12

    See the detailed result >

    AT3G09580.1

    Model type
    Protein coding
    Short Description
    FAD/NAD(P)-binding oxidoreductase family protein
    Computational Description
    FAD/NAD(P)-binding oxidoreductase family protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family (TAIR:AT5G14220.1); Has 2908 Blast hits to 2906 proteins in 704 species: Archae - 36; Bacteria - 1433; Metazoa - 261; Fungi - 51; Plants - 352; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR