F02023

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02023

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02023

Determination of introduced cDNA(s)

  • RAFL04-12-K15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-12-K15 - Resource: pda00441

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-12-K15 - full reading
    ACCACAGAGA AAACTTCGTC TCTCTTCTCT GCTTCGCCCT CTCATTTCCT 
    GTGAGATAAA GGCGGAGTCT CTCTCCAGTT ATTTTGCTCA TCCATCGATT
    CTTAGAGTTC AAAATGGTTG ATCAAGTTCA GCACCCCACT ATTGCGCAGA
    AAGCTGCCGG GCAGTTCATG CGTTCAAGTG TTTCCAAGGA CGTTCAAGTG
    GGTTACCAGA GGCCTTCTAT GTATCAAAGA CATGCAACCT ACGGAAACTA
    CTCCAATGCT GCATTTCAAT TTCCTCCGAC ATCCCGGATG TTGGCAACAA
    CTGCTTCTCC CGTGTTTGTC CAAACCCCAG GAGAGAAGGG GTTCACTAAC
    TTTGCCCTTG ACTTTCTGAT GGGTGGTGTT TCTGCTGCCG TCTCCAAGAC
    TGCTGCTGCT CCTATTGAAC GTGTTAAGCT TTTGATCCAG AACCAGGATG
    AGATGATTAA AGCTGGCAGG CTTTCTGAAC CCTACAAGGG TATTGGTGAC
    TGTTTCGGCA GGACGATTAA GGATGAAGGT TTTGGTTCTC TATGGAGAGG
    AAACACTGCC AATGTTATCC GTTATTTCCC CACTCAGGCC TTGAACTTTG
    CCTTCAAAGA TTACTTCAAA AGACTTTTCA ACTTTAAGAA GGACAGAGAT
    GGTTACTGGA AGTGGTTTGC TGGTAACTTG GCATCTGGAG GAGCAGCTGG
    TGCCTCTTCC CTTCTGTTTG TGTACTCCCT TGACTATGCC CGTACCCGTC
    TAGCTAATGA TGCCAAGGCT GCAAAGAAAG GAGGTGGTGG AAGACAGTTT
    GATGGTCTTG TTGATGTCTA CAGAAAGACA CTTAAGACTG ATGGTATTGC
    TGGTCTGTAC CGTGGATTCA ACATCTCATG TGTTGGTATC ATTGTCTACC
    GTGGTCTGTA CTTTGGACTC TATGACTCTG TGAAGCCTGT TCTCCTCACT
    GGTGACTTAC AGGACAGTTT CTTCGCTAGT TTCGCTCTTG GATGGGTTAT
    TACCAATGGT GCGGGTCTTG CATCCTACCC CATTGACACT GTCCGCAGAA
    GAATGATGAT GACGTCTGGT GAAGCTGTCA AGTACAAGAG TTCTTTGGAC
    GCCTTCAAGC AGATCCTCAA GAATGAAGGA GCCAAGTCAC TCTTCAAGGG
    AGCTGGTGCC AACATTCTGC GTGCTGTTGC AGGTGCTGGT GTGCTTTCCG
    GTTACGACAA ATTGCAGCTG ATTGTCTTCG GTAAGAAGTA CGGATCAGGA
    GGTGCCTAAG CATTGCTTCT TCCTCCTTTT TTCGATTTTA ATTGCGGTTT
    TAAGGCCCGC AATAAACTGA GATGTTGATG AAATTTTTTT TGCTTAAGAC
    TTAGGGAGGC ATGTGCCCTA AACCAAATTT TATATCGTTC TGACGCCAAC
    TTTTTTTACT TATGGAATAA TTCATGTTTG AGACAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT3G08580.2 [+] show detail - ADP/ATP carrier 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Mitochondrial substrate carrier 9e-81
    HMMPfam Mitochondrial substrate/solute carrier 5.3e-24
    HMMPfam Mitochondrial substrate/solute carrier 4.4e-21
    HMMPfam Mitochondrial substrate/solute carrier 1.3e-16
    HMMPanther ADP,ATP CARRIER PROTEIN 2.5e-186
    HMMPanther Mitochondrial substrate carrier 2.5e-186
    FPrintScan Mitochondrial carrier protein 2.9e-68
    FPrintScan Mitochondrial carrier protein 2.9e-68
    FPrintScan Mitochondrial carrier protein 2.9e-68
    FPrintScan Mitochondrial carrier protein 2.9e-68
    FPrintScan Mitochondrial carrier protein 2.9e-68
    FPrintScan Mitochondrial carrier protein 2.9e-68
    FPrintScan Adenine nucleotide translocator 1 2.2e-65
    FPrintScan Adenine nucleotide translocator 1 2.2e-65
    FPrintScan Adenine nucleotide translocator 1 2.2e-65
    FPrintScan Adenine nucleotide translocator 1 2.2e-65
    FPrintScan Adenine nucleotide translocator 1 2.2e-65
    FPrintScan Adenine nucleotide translocator 1 2.2e-65
    FPrintScan Adenine nucleotide translocator 1 2.2e-65
    ProfileScan Mitochondrial substrate/solute carrier 25.238
    ProfileScan Mitochondrial substrate/solute carrier 21.741
    ProfileScan Mitochondrial substrate/solute carrier 18.973

    See the detailed result >

    AT3G08580.2

    Model type
    Protein coding
    Short Description
    ADP/ATP carrier 1
    Curator Summary
    mitochondrial ADP/ATP carrier
    Computational Description
    ADP/ATP carrier 1 (AAC1); FUNCTIONS IN: binding, copper ion binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 2 (TAIR:AT5G13490.2); Has 19858 Blast hits to 12534 proteins in 484 species: Archae - 0; Bacteria - 0; Metazoa - 8967; Fungi - 5060; Plants - 3882; Viruses - 0; Other Eukaryotes - 1949 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR