F02040

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02040

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02040

Determination of introduced cDNA(s)

  • RAFL05-07-D16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-D16 - Resource: pda00969

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-07-D16 - full reading 
    ATAAACAGAG TTCTCACACC AATACAAAAG AGACCATCAC CGTGAGAAAG 
    AGAAGAAGAA CAAAAAAGTT AGCCATGGCA TCAAGAAGAG TTTCTTCGCT 
    GCTCTCTCGC TCTTTCATGT CCTCCTCACG TTCTATCTTC TCTCTTAGAG 
    GCATGAACAG AGGAGCTCAA AGATACAGTA ACCTCGCTGC TGCTGTCGAA 
    AACACTATTA CTCCACCAGT GAAAGTTGAA CACACACAGC TTCTAATCGG 
    TGGAAGATTC GTTGATGCAG TGTCAGGAAA AACTTTCCCT ACTTTGGATC 
    CAAGAAATGG AGAAGTGATT GCTCAAGTGT CTGAAGGTGA TGCAGAAGAC 
    GTGAACCGCG CGGTTGCAGC TGCACGAAAG GCTTTTGATG AAGGACCATG 
    GCCTAAAATG ACAGCTTATG AGAGATCAAA GATACTGTTT CGTTTCGCTG 
    ATTTAATCGA GAAACATAAT GATGAGATTG CTGCTCTTGA GACTTGGGAT 
    AATGGGAAAC CTTATGAACA ATCTGCTCAA ATTGAAGTAC CAATGCTTGC 
    TAGGGTGTTC CGGTACTATG CTGGTTGGGC AGACAAGATA CATGGAATGA 
    CAATGCCAGG AGATGGTCCA CACCATGTGC AGACCTTACA TGAGCCTATA 
    GGAGTCGCTG GACAAATCAT CCCATGGAAC TTCCCTCTTC TCATGCTTTC 
    TTGGAAACTT GGACCAGCTT TAGCTTGCGG TAACACCGTT GTTCTCAAAA 
    CTGCTGAGCA AACTCCTCTA TCTGCTCTTC TTGTTGGGAA ACTACTTCAT 
    GAGGCTGGAC TTCCTGATGG AGTTGTGAAT ATAGTTTCTG GATTTGGGGC 
    TACTGCTGGT GCAGCTATAG CTAGTCACAT GGACGTTGAT AAGGTTGCTT 
    TCACCGGGTC TACTGATGTT GGGAAGATTA TTCTTGAGTT AGCTTCAAAA 
    AGCAACCTTA AGGCAGTGAC TCTTGAGCTT GGAGGAAAGT CACCATTCAT 
    TGTATGTGAA GATGCTGATG TGGATCAGGC CGTTGAGCTT GCACATTTCG 
    CTTTGTTCTT TAACCAGGGA CAATGTTGTT GTGCTGGTTC GCGTACATTT 
    GTACATGAAC GTGTGTATGA TGAGTTTGTA GAGAAAGCTA AAGCTCGTGC 
    ACTCAAGCGA AATGTTGGAG ATCCCTTCAA GTCAGGCATT GAGCAAGGTC 
    CCCAGGTAGA CTCAGAGCAA TTCAACAAAA TCCTGAAGTA CATCAAACAT 
    GGAGTTGAGG CTGGAGCCAC ATTACAAGCT GGAGGTGACA GGCTTGGTTC 
    CAAGGGTTAC TACATTCAAC CTACTGTCTT CTCAGATGTG AAAGATGACA 
    TGCTCATAGC AACAGACGAG ATTTTCGGGC CGGTTCAAAC CATACTGAAA 
    TTCAAGGATC TTGATGAGGT GATTGCAAGG GCCAACAACT CAAGGTACGG 
    TTTAGCTGCT GGAGTGTTCA CACAGAATCT TGACACAGCA CACCGGCTGA 
    TGCGAGCACT CAGAGTTGGG ACTGTTTGGA TCAACTGTTT TGATGTACTT 
    GATGCATCAA TTCCATTTGG AGGGTATAAG ATGAGTGGCA TTGGTAGAGA 
    GAAAGGTATC TACAGTCTCA ACAATTACTT GCAAGTCAAG GCTGTTGTTA 
    CTTCCCTCAA GAACCCTGCC TGGCTCTAAA CCATACCAGG TGGTTACACT 
    TATTTCTCGA GTTTGGTTTA TGATTTGCAC TTTTGCTTTG AAAACCTGGA 
    GTTGTACTGT GTCTCTAGGA TTTCTAGATT TTGAGAGTAA TTTATCTTCA 
    ATACATTTTG CAAATAAAGC TACATGACAA TGTGTGATTA ATAAACACAA 
    ACTCTTATCA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT1G23800.1 [+] show detail - aldehyde dehydrogenase 2B7
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Aldehyde dehydrogenase, conserved site 0
    PatternScan Aldehyde dehydrogenase, conserved site 0
    HMMPanther ALDEHYDE DEHYDROGENASE 2.2e-294
    HMMPanther Aldehyde dehydrogenase 2.2e-294
    superfamily Aldehyde/histidinol dehydrogenase 1e-189
    Gene3D Aldehyde dehydrogenase, N-terminal 2e-109
    HMMPfam Aldehyde dehydrogenase 2.5e-183

    See the detailed result >

    AT1G23800.1

    Model type
    Protein coding
    Short Description
    aldehyde dehydrogenase 2B7
    Curator Summary
    Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product.
    Computational Description
    aldehyde dehydrogenase 2B7 (ALDH2B7); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 2B4 (TAIR:AT3G48000.1); Has 60835 Blast hits to 60447 proteins in 2994 species: Archae - 474; Bacteria - 34339; Metazoa - 2649; Fungi - 2135; Plants - 1675; Viruses - 0; Other Eukaryotes - 19563 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR