F02128

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02128

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02128

Determination of introduced cDNA(s)

  • RAFL06-80-P18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-80-P18 - Resource: pda17243

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-80-P18 - full reading 
    AGAATCATCA AACATCCAAA CTCTATCCTT TCGTTTTCTT GTCAGACAAA 
    AACTAATACT AGATGGGTAA CAGTTTAGGC GGCAAGAAAA CGACCAAAGT 
    CATGAAGATA GACGGCGAGA CTTTTAAACT GAAAACTCCG GTGACGGCTG 
    AGGAGGTCTT AAAAGACTTT CCCGGCCACG TCTTGTTAGA CTCCGAATCC 
    GTCAAGCACT ACGGTGCCCG AGCCAAACCA CTTGAGGCGA AGCAGAGGTT 
    GGAGGCGAAG CGGCTTTATT TTGTGGTGGA GCCGGTGAAA GAGTGTCCAC 
    CGAGAAGGGT AAGATCAGGA ATTCACGTGA GTGCAAAGGA GAGGCTTGAG 
    AGTCTCATGC TGGCCCGGAG ATCGTCTTCC GATCTCTCCA TACTCAAACC 
    ACCAGGAGGA TGGACGACGG AGGAAGAAGA AGGAGCGGTG AGGAGGGTGA 
    AGGTGAGGAT TCCCAAAGCT GAGCTTGAAA AGCTCGTTAA AGAAGGAGCC 
    ACCGAAGCCG AAGCTACGCA GAAGATCGCT GCTCTCTTTA TGGCCAAACA 
    GAGGCAAGAG GAGGCATATC AGAACACACG ACAGGACGAG CCCGCCACCA 
    CGGCCACCGC CACCGCCACC ACCACCGCCA CAAGAGGAGT CAAATCCCGT 
    TTGAAACGAG TGAGTTTCAT GGCGGAAAGA GGAGGAGGGA GCGAGATCAC 
    TGTAGCTTGA ACCAATAAAC ATATGTATTA GAGAATGCTT CCCAACGTTT 
    CTGCAAATTC TATGTACATA AAAAACGCAG AAAGTTTGAG AGAAAGCTTA 
    TTCAGATATT CATCCATGTC TCCACTCTAT TGTACTCAAG AGTTTTACTA 
    TTATTACATT GTAGAAGAAA CAGTCATTTT ATAGGCAAAA AAAAAA

    Gene models with high sequence identity

    1. AT2G01340.1 [+] show detail - At17.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation,...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G01340.1

    Model type
    Protein coding
    Curator Summary
    Encodes a protein whose expression is responsive to nematode infection.
    Computational Description
    At17.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, response to nematode; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 110 Blast hits to 110 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR