F02215

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02215

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F02215

Determination of introduced cDNA(s)

  • RAFL05-21-B19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-B19 - Resource: pda02809

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-21-B19 - full reading 
    AAACCCATTT AGCTTTTGAC TTGTGTTGTT CTTCGTCGCT CTGTCTTAAT 
    ATTCCCTCAC CAACTCGTTT CATTTGGGGA CAAGCTTCTT CGATTTTCCT 
    CTCAGACCAA TCGGGCTTTC GAATCCCATC AGTAGAAATG GCTACATCAA 
    GGTTCCAAGC ATTCTTGAAC AGTCCCATTG GCCCAAAAAC AACTCATTTC 
    TGGGGGCCTA TCGCTAATTG GGGTTTTGTT GCTGCTGGTT TGGTGGATAT 
    GCAAAAGCCC CCTGAAATGA TTTCTGGAAA CATGTCGTCA GCTATGTGCG 
    TTTTACTCTG CATTGTTCAT GAGGTTTGCC TGGATGGTGC AACCACGTAA 
    CTATTTGCTA CTTGCGTGCC ATGCATCAAA CGAGACTGTA CAACTCTATC 
    AGCTCTCACG TTGGGCTAGA GCCCAGGGGT ATTTATCCTC CAAGAAAGAA 
    GAGGAGAAAC CATCTCAGTA AACCAAAATG AGGAAAGGTT TCTTCAACGC 
    TGCTTCAGAA TTTGTTCGTG GGAATTACTG AATCCATCCA TTTGATTTTC 
    TTTCGAAACG TGTTTTGTAT TGTGTCCCCA AGCTATGGTT GCTTTACTTG 
    TTGGATCATT CACTAACATT ATATCCTTTG TTTTCATAAG TAACCGCTTG 
    TAATAAAATT TGGGACCAGT CGTCATTCCA CATTCGTGTT CACACAAAAA 
    AGGGGTTCAA ACATGAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT5G20090.1 [+] show detail - Uncharacterised protein family (UPF0041)
      E-value: 0; Score: 99.86

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Uncharacterised protein family UPF0041 1.6e-13
    HMMPfam Uncharacterised protein family UPF0041 2.1e-18
    HMMPanther BRAIN PROTEIN 44-LIKE 1e-19
    HMMPanther UPF0041 BRAIN PROTEIN 44-RELATED 1e-19
    HMMPanther UPF0041 BRAIN PROTEIN 44-RELATED 2.4e-18

    See the detailed result >

    AT5G20090.1

    Model type
    Protein coding
    Short Description
    Uncharacterised protein family (UPF0041)
    Computational Description
    Uncharacterised protein family (UPF0041); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0041) (TAIR:AT4G14695.1); Has 929 Blast hits to 928 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 402; Fungi - 251; Plants - 173; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR