F02305

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02305

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02305

Determination of introduced cDNA(s)

  • RAFL09-38-M21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-38-M21 - Resource: pda06195

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-38-M21 - full reading
    ATGAGAGATA GACAGAGAGG GAAAACAACT ACACAAGTCA AAATTTCTGT 
    TCTAAAAAAG TAAAAGAAGT ATGGTGGAGG AAACGAGCTC TGGTGGTGGC
    TCATCGGCTT CTCCGATCAA AACCATCGTC GTTTTGGTTC AGGAGAACAG
    GTCGTTCGAT CACATGTTAG GTTGGTTCAA GGAGCTTAAC CCAGAAATCG
    ATGGAGTATC CGAATCCGAA CCAAGATCCA ACCCACTTTC TACATCTGAC
    CCGAACTCTG CTCAAATCTT CTTCGGCAAA GAATCTCAGA ACATTGATCC
    TGATCCCGGT CACTCTTTTC AGGCGATCTA CGAACAAGTG TTTGGAAAAC
    CATTCAGCGA CGAGAGTCCG TACCCGGATC CGAAGATGAA CGGGTTCGTA
    CAAAACGCAG AGGCGATAAC AAAAGGGATG TCGGAGAAAG TAGTGATGCA
    AGGTTTTCCG CCGGAGAAAC TTCCGGTATT CAAGGAACTA GTTCAAGAAT
    TCGCTGTCTG CGATCGGTGG TTCTCGTCGT TGCCCTCGTC CACGCAGCCT
    AACCGACTCT ACGTCCACGC GGCGACATCA AACGGTGCGT TTAGTAATGA
    CACTAACACG CTTGTTCGTG GCTTTCCTCA GAGGACAGTG TTCGAATCAC
    TTGAAGAGAG CGGTTTCACA TTTGGAATTT ATTACCAATC CTTTCCTAAT
    TGCCTCTTTT ACAGGAACAT GAGGAAACTG AAGTACGTGG ACAACTTCCA
    TCAATACCAC TTAAGCTTCA AGAGGCATTG CAAAGAAGGG AAGCTTCCAA
    ACTATGTGGT TATAGAACCA AGGTACTTCA AGATTTTGTC GGCTCCAGCT
    AATGATGACC ATCCCAAAAA CGACGTCGTT GAAGGCCAAA ATCTAGTCAA
    AGAAATCTAC GAAGCCTTAA GAGCTAGTCC TCAGTGGAAC GAGATTCTCT
    TCGTTGTTGT TTATGATGAA CATGGTGGTT ATTATGACCA CGTCCCTACT
    CCAGTCATTG GTGTCCCAAA TCCTGATGGT CTAGTTGGAC CTGAGCCCTA
    TAACTTTAAG TTTGACCGGC TTGGTGTTAG GGTTCCTGCT TTGCTAATCT
    CGCCTTGGAT CGAACCTGGA ACGGTGTTAC ACGAGCCAAA TGGACCAGAG
    CCAACGTCGC AGTTCGAACA TTCATCAATT CCGGCAACAC TGAAGAAAAT
    ATTCAACCTC AAGAGCTTTC TTACAAAGCG TGACGAATGG GCTGGAACAC
    TCGATGCTGT CATCAACCGG ACCAGCCCAA GGACGGACTG CCCCGTCACA
    TTACCGGGAC TTCCTAGGGC AAGAGACATA GACATTGGAA CACAAGAAGA
    AGACGAAGAT CTCACTGATT TTCAAATCGA ACTGATTCAA GCAGCGGCTG
    TACTAAAAGG AGATCATATC AAAGACATTT ACCCGTTTAA GCTCGCAGAT
    AAAATGAAGG TTTTGGATGC GGCTAGGTAC GTAGAAGAAG CTTTCACTAG
    ATTCCATGGT GAGTCCAAGA AGGCTAAAGA AGAAGGCCGT GATGAGCATG
    AGATCGTTGA TCTTTCTAAA GGATCTACTC GTCACTCGAC TCCTAAGTCT
    TTTGTTCAGA AGTTATTCTC GTGTTTGATT TGTGATAATT GATCTTGAGT
    TGAAACAGAT TTGATCTCTG TGAGATTTGG TGTATTTCTC GGATTTTATG
    TGAAGAGCGT TTGAAATTTG ATATTTGTTT GTTTTCCAAA AAAAAAAAAA
    AAA

    Gene models with high sequence identity

    1. AT3G03520.1 [+] show detail - non-specific phospholipase C3
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    See the detailed result >

    AT3G03520.1

    Model type
    Protein coding
    Short Description
    non-specific phospholipase C3
    Curator Summary
    Lysophosphatidic acid phosphatase highly expressed during phosphate starvation and abiotic stresses. Role in lipid synthesis.
    Computational Description
    non-specific phospholipase C3 (NPC3); FUNCTIONS IN: hydrolase activity, acting on ester bonds, Lysophosphatidic acid phosphatase activity; INVOLVED IN: cellular response to phosphate starvation, phosphate metabolic process, response to abiotic stimulus; LOCATED IN: vacuole, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: non-specific phospholipase C4 (TAIR:AT3G03530.1); Has 2235 Blast hits to 2112 proteins in 404 species: Archae - 32; Bacteria - 1866; Metazoa - 0; Fungi - 127; Plants - 159; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR