F02329

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02329

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02329

Determination of introduced cDNA(s)

  • RAFL09-19-I20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-I20 - Resource: pda05515

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-I20 - full reading
    CTCCCCAGAA AAGAGAAATG AAGAGATACC AAAATCTAAA GGTAGGAGAA 
    GCTTTCTCCA AAAATCGTAT TTACCCATTT GCTTGCAATG AACTAAGCTC
    CATATTGAAT CTTGCTTACT CTCTATCACC CAAAAATGTC AAAGCTTTGA
    TCTTCCAAGA TACCCTCTCC GCTTTTCGTC TTCTTCCCGA CATCAATACA
    TCAGCTGCTG TTTCAGCCGC TAACCTTCTC CTGAAGAGCG TGGAAGCGGT
    GCTCCCCAAA CAGAAGAAGA ATTTAGCCAT TGTAGAATTC AAGCAGGCAA
    AAGTAGCACT AAAGAGGCGT AGTAAGAACC GTGAGGAAGA AGATATAGAT
    ATACCTTCAC TTCCACAAGA TATCCTTATT CACATCTTCA GTTTCCTCGA
    GATATCGTCC TTAGTTTCCT CAGCTCAAGT GTCTCGCTCT TGGAACCAAG
    CAACGCATGA GAACTCTCTG TGGCAATCAC AATTTGACCT TCACTTCAAT
    CACAAAGTCT TGATTCGTAT GCAGTCCGAT ATTGACTGGA GAGAAGCCTT
    TAAGAAAGCA TACATCGCGG CTAATTCATC GGAGGCATTG AGATCTGGCC
    GGGGATACTG CAGTTACTGT GATTCTATTG TTTGGCACGA AAACTTGAGA
    TGTCTGAACA AACAATGTCG GTTGAAATCA GGCAACAAGC CACTCGACCT
    CATAACAACT CACCAGGTTG TCAACTATTT GCTGGGGATA GAGAGTTCTG
    ATGATGAAAG CGAATCAGAC GATGAAGCCT TTCCTGGACG ACTATGGAAA
    CTTTCTTACG TGCCTGATTA CTTGTAAATC ACTAAAGAGA AATATATGGC
    CCTATATGGG CTTGTGGTAC CTCATTGGAC CATTTGGCCT TACTAAGAAT
    GTTTGTGTAG TTTCAAGCCT ACTTGATTAG CTTTTTGTTT GCAGATACGT
    ATGGTAATAT TGTGTTTTAT CTAAAAGAAG TTTCTACTTT TC

    Gene models with high sequence identity

    1. AT5G52880.1 [+] show detail - F-box family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CELL DIVISION CONTROL PROTEIN 4 0.0000025
    HMMPanther F-BOX AND WD40 DOMAIN PROTEIN 0.0000025
    Gene3D no description 0.00000031
    HMMSmart F-box domain, cyclin-like 0.00000012
    HMMPfam F-box domain, cyclin-like 0.0000000024
    superfamily F-box domain, Skp2-like 0.0000000000000068
    ProfileScan F-box domain, cyclin-like 12.544

    See the detailed result >

    AT5G52880.1

    Model type
    Protein coding
    Short Description
    F-box family protein
    Computational Description
    F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR